Analysis of interatomic Contacts of Structural Units in PDB entry:
9VA7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VA7 entry

There are 8 chains in PDB entry 9VA7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 14	THR 432
B	SER 14	VAL 433
C	SER 14	VAL 433
D	SER 14	VAL 433
E	SER 14	VAL 433
F	SER 14	THR 431
G	SER 14	VAL 433
H	SER 14	THR 432

There are167 helices in PDB entry 9VA7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	30	Right-handed alpha
Helix 2	AA2	A	35	53	Right-handed alpha
Helix 3	AA3	A	72	85	Right-handed alpha
Helix 4	AA4	A	86	88	Right-handed 310
Helix 5	AA5	A	102	104	Right-handed 310
Helix 6	AA6	A	128	142	Right-handed alpha
Helix 7	AA7	A	173	186	Right-handed alpha
Helix 8	AA8	A	209	217	Right-handed alpha
Helix 9	AA9	A	218	222	Right-handed 310
Helix 10	AB1	A	226	237	Right-handed alpha
Helix 11	AB2	A	237	242	Right-handed alpha
Helix 12	AB3	A	251	261	Right-handed alpha
Helix 13	AB4	A	273	293	Right-handed alpha
Helix 14	AB5	A	294	304	Right-handed alpha
Helix 15	AB6	A	304	315	Right-handed alpha
Helix 16	AB7	A	316	325	Right-handed alpha
Helix 17	AB8	A	326	331	Right-handed 310
Helix 18	AB9	A	332	357	Right-handed alpha
Helix 19	AC1	A	373	396	Right-handed alpha
Helix 20	AC2	A	402	409	Right-handed alpha
Helix 21	AC3	A	416	431	Right-handed alpha
Helix 22	AC4	B	15	31	Right-handed alpha
Helix 23	AC5	B	35	53	Right-handed alpha
Helix 24	AC6	B	72	84	Right-handed alpha
Helix 25	AC7	B	85	88	Right-handed 310
Helix 26	AC8	B	102	104	Right-handed 310
Helix 27	AC9	B	128	142	Right-handed alpha
Helix 28	AD1	B	173	186	Right-handed alpha
Helix 29	AD2	B	209	217	Right-handed alpha
Helix 30	AD3	B	218	222	Right-handed 310
Helix 31	AD4	B	226	237	Right-handed alpha
Helix 32	AD5	B	237	242	Right-handed alpha
Helix 33	AD6	B	251	261	Right-handed alpha
Helix 34	AD7	B	273	293	Right-handed alpha
Helix 35	AD8	B	294	304	Right-handed alpha
Helix 36	AD9	B	304	314	Right-handed alpha
Helix 37	AE1	B	316	325	Right-handed alpha
Helix 38	AE2	B	326	331	Right-handed 310
Helix 39	AE3	B	332	357	Right-handed alpha
Helix 40	AE4	B	372	397	Right-handed alpha
Helix 41	AE5	B	402	410	Right-handed alpha
Helix 42	AE6	B	416	431	Right-handed alpha
Helix 43	AE7	C	15	31	Right-handed alpha
Helix 44	AE8	C	35	53	Right-handed alpha
Helix 45	AE9	C	72	84	Right-handed alpha
Helix 46	AF1	C	85	88	Right-handed 310
Helix 47	AF2	C	102	104	Right-handed 310
Helix 48	AF3	C	128	142	Right-handed alpha
Helix 49	AF4	C	173	186	Right-handed alpha
Helix 50	AF5	C	209	217	Right-handed alpha
Helix 51	AF6	C	218	222	Right-handed 310
Helix 52	AF7	C	226	237	Right-handed alpha
Helix 53	AF8	C	237	243	Right-handed alpha
Helix 54	AF9	C	251	261	Right-handed alpha
Helix 55	AG1	C	273	293	Right-handed alpha
Helix 56	AG2	C	294	304	Right-handed alpha
Helix 57	AG3	C	304	313	Right-handed alpha
Helix 58	AG4	C	316	325	Right-handed alpha
Helix 59	AG5	C	326	331	Right-handed 310
Helix 60	AG6	C	332	357	Right-handed alpha
Helix 61	AG7	C	372	397	Right-handed alpha
Helix 62	AG8	C	402	411	Right-handed alpha
Helix 63	AG9	C	416	431	Right-handed alpha
Helix 64	AH1	D	15	31	Right-handed alpha
Helix 65	AH2	D	35	53	Right-handed alpha
Helix 66	AH3	D	72	84	Right-handed alpha
Helix 67	AH4	D	85	88	Right-handed 310
Helix 68	AH5	D	102	104	Right-handed 310
Helix 69	AH6	D	128	142	Right-handed alpha
Helix 70	AH7	D	173	186	Right-handed alpha
Helix 71	AH8	D	209	217	Right-handed alpha
Helix 72	AH9	D	218	222	Right-handed 310
Helix 73	AI1	D	226	237	Right-handed alpha
Helix 74	AI2	D	237	242	Right-handed alpha
Helix 75	AI3	D	251	261	Right-handed alpha
Helix 76	AI4	D	273	293	Right-handed alpha
Helix 77	AI5	D	294	304	Right-handed alpha
Helix 78	AI6	D	304	315	Right-handed alpha
Helix 79	AI7	D	316	324	Right-handed alpha
Helix 80	AI8	D	325	331	Right-handed 310
Helix 81	AI9	D	332	357	Right-handed alpha
Helix 82	AJ1	D	372	397	Right-handed alpha
Helix 83	AJ2	D	402	410	Right-handed alpha
Helix 84	AJ3	D	416	432	Right-handed alpha
Helix 85	AJ4	E	15	30	Right-handed alpha
Helix 86	AJ5	E	35	53	Right-handed alpha
Helix 87	AJ6	E	72	84	Right-handed alpha
Helix 88	AJ7	E	85	88	Right-handed 310
Helix 89	AJ8	E	102	104	Right-handed 310
Helix 90	AJ9	E	128	142	Right-handed alpha
Helix 91	AK1	E	173	186	Right-handed alpha
Helix 92	AK2	E	209	217	Right-handed alpha
Helix 93	AK3	E	218	222	Right-handed 310
Helix 94	AK4	E	226	237	Right-handed alpha
Helix 95	AK5	E	237	243	Right-handed alpha
Helix 96	AK6	E	251	261	Right-handed alpha
Helix 97	AK7	E	273	293	Right-handed alpha
Helix 98	AK8	E	294	303	Right-handed alpha
Helix 99	AK9	E	304	315	Right-handed alpha
Helix 100	AL1	E	316	325	Right-handed alpha
Helix 101	AL2	E	326	331	Right-handed 310
Helix 102	AL3	E	332	357	Right-handed alpha
Helix 103	AL4	E	372	396	Right-handed alpha
Helix 104	AL5	E	402	409	Right-handed alpha
Helix 105	AL6	E	416	431	Right-handed alpha
Helix 106	AL7	F	15	30	Right-handed alpha
Helix 107	AL8	F	35	52	Right-handed alpha
Helix 108	AL9	F	72	84	Right-handed alpha
Helix 109	AM1	F	85	88	Right-handed 310
Helix 110	AM2	F	102	104	Right-handed 310
Helix 111	AM3	F	128	142	Right-handed alpha
Helix 112	AM4	F	173	187	Right-handed alpha
Helix 113	AM5	F	209	217	Right-handed alpha
Helix 114	AM6	F	218	222	Right-handed 310
Helix 115	AM7	F	226	237	Right-handed alpha
Helix 116	AM8	F	237	242	Right-handed alpha
Helix 117	AM9	F	251	261	Right-handed alpha
Helix 118	AN1	F	273	293	Right-handed alpha
Helix 119	AN2	F	294	304	Right-handed alpha
Helix 120	AN3	F	304	315	Right-handed alpha
Helix 121	AN4	F	316	326	Right-handed alpha
Helix 122	AN5	F	332	357	Right-handed alpha
Helix 123	AN6	F	372	396	Right-handed alpha
Helix 124	AN7	F	402	410	Right-handed alpha
Helix 125	AN8	F	416	431	Right-handed alpha
Helix 126	AN9	G	15	30	Right-handed alpha
Helix 127	AO1	G	35	53	Right-handed alpha
Helix 128	AO2	G	72	85	Right-handed alpha
Helix 129	AO3	G	86	88	Right-handed 310
Helix 130	AO4	G	102	104	Right-handed 310
Helix 131	AO5	G	128	142	Right-handed alpha
Helix 132	AO6	G	173	186	Right-handed alpha
Helix 133	AO7	G	209	217	Right-handed alpha
Helix 134	AO8	G	218	222	Right-handed 310
Helix 135	AO9	G	226	237	Right-handed alpha
Helix 136	AP1	G	239	243	Right-handed 310
Helix 137	AP2	G	251	261	Right-handed alpha
Helix 138	AP3	G	273	293	Right-handed alpha
Helix 139	AP4	G	294	304	Right-handed alpha
Helix 140	AP5	G	304	315	Right-handed alpha
Helix 141	AP6	G	316	325	Right-handed alpha
Helix 142	AP7	G	326	329	Right-handed 310
Helix 143	AP8	G	332	357	Right-handed alpha
Helix 144	AP9	G	373	397	Right-handed alpha
Helix 145	AQ1	G	402	409	Right-handed alpha
Helix 146	AQ2	G	416	432	Right-handed alpha
Helix 147	AQ3	H	15	31	Right-handed alpha
Helix 148	AQ4	H	35	52	Right-handed alpha
Helix 149	AQ5	H	72	84	Right-handed alpha
Helix 150	AQ6	H	85	88	Right-handed 310
Helix 151	AQ7	H	102	104	Right-handed 310
Helix 152	AQ8	H	128	142	Right-handed alpha
Helix 153	AQ9	H	173	186	Right-handed alpha
Helix 154	AR1	H	209	217	Right-handed alpha
Helix 155	AR2	H	218	222	Right-handed 310
Helix 156	AR3	H	226	237	Right-handed alpha
Helix 157	AR4	H	239	243	Right-handed 310
Helix 158	AR5	H	251	261	Right-handed alpha
Helix 159	AR6	H	273	293	Right-handed alpha
Helix 160	AR7	H	294	304	Right-handed alpha
Helix 161	AR8	H	304	315	Right-handed alpha
Helix 162	AR9	H	316	325	Right-handed alpha
Helix 163	AS1	H	326	331	Right-handed 310
Helix 164	AS2	H	332	357	Right-handed alpha
Helix 165	AS3	H	374	396	Right-handed alpha
Helix 166	AS4	H	402	409	Right-handed alpha
Helix 167	AS5	H	416	431	Right-handed alpha

There are 8 sheets in PDB entry 9VA7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	64	first strand
Strand 2	A	91	100	parallel
Strand 3	A	105	114	anti-parallel
Strand 4	A	117	123	anti-parallel
Strand 5	A	146	150	parallel
Strand 6	A	205	208	parallel
Strand 7	A	200	202	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	64	first strand
Strand 2	B	91	100	parallel
Strand 3	B	105	114	anti-parallel
Strand 4	B	117	123	anti-parallel
Strand 5	B	146	150	parallel
Strand 6	B	205	208	parallel
Strand 7	B	200	202	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	64	first strand
Strand 2	C	91	100	parallel
Strand 3	C	105	114	anti-parallel
Strand 4	C	117	123	anti-parallel
Strand 5	C	146	150	parallel
Strand 6	C	205	208	parallel
Strand 7	C	200	202	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	64	first strand
Strand 2	D	91	100	parallel
Strand 3	D	105	114	anti-parallel
Strand 4	D	117	123	anti-parallel
Strand 5	D	146	150	parallel
Strand 6	D	205	208	parallel
Strand 7	D	200	202	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	64	first strand
Strand 2	E	91	100	parallel
Strand 3	E	105	114	anti-parallel
Strand 4	E	117	123	anti-parallel
Strand 5	E	146	150	parallel
Strand 6	E	205	208	parallel
Strand 7	E	200	202	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	64	first strand
Strand 2	F	91	100	parallel
Strand 3	F	105	114	anti-parallel
Strand 4	F	117	123	anti-parallel
Strand 5	F	146	150	parallel
Strand 6	F	205	208	parallel
Strand 7	F	200	202	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	64	first strand
Strand 2	G	91	100	parallel
Strand 3	G	105	114	anti-parallel
Strand 4	G	117	123	anti-parallel
Strand 5	G	146	150	parallel
Strand 6	G	205	208	parallel
Strand 7	G	200	202	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	64	first strand
Strand 2	H	91	100	parallel
Strand 3	H	105	114	anti-parallel
Strand 4	H	117	123	anti-parallel
Strand 5	H	146	150	parallel
Strand 6	H	205	208	parallel
Strand 7	H	200	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VA7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VA7