Analysis of interatomic Contacts of Structural Units in PDB entry:
9VAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VAE entry

There is 1 chain in PDB entry 9VAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9VAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed alpha
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
49 57Right-handed alpha
Helix 4
AA4
A
62 69Right-handed alpha
Helix 5
AA5
A
80 87Right-handed alpha
Helix 6
AA6
A
104 113Right-handed alpha
Helix 7
AA7
A
121 123Right-handed 310
Helix 8
AA8
A
129 152Right-handed alpha
Helix 9
AA9
A
178 191Right-handed alpha
Helix 10
AB1
A
201 212Right-handed alpha
Helix 11
AB2
A
221 231Right-handed alpha
Helix 12
AB3
A
251 256Right-handed alpha
Helix 13
AB4
A
268 272Right-handed 310
Helix 14
AB5
A
295 299Right-handed 310
Helix 15
AB6
A
300 317Right-handed alpha
Helix 16
AB7
A
322 325Right-handed 310
Helix 17
AB8
A
326 331Right-handed alpha
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There are 2 sheets in PDB entry 9VAE. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
35 39parallel
Strand 3
A
2 5parallel
Strand 4
A
72 77parallel
Strand 5
A
92 96parallel
Strand 6
A
116 119parallel
Strand 7
A
333 335anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
A
194 199parallel
Strand 3
A
171 175parallel
Strand 4
A
234 237parallel
Strand 5
A
263 266parallel
Strand 6
A
288 292parallel
Strand 7
A
281 285anti-parallel
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