Analysis of interatomic Contacts of Structural Units in PDB entry:
9VAP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VAP entry

There are 2 chains in PDB entry 9VAP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 54ALA 949
B
 MET 4SER 180
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9VAP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
105 114Right-handed 310
Helix 2
AA2
A
134 153Right-handed alpha
Helix 3
AA3
A
154 156Right-handed 310
Helix 4
AA4
A
167 182Right-handed alpha
Helix 5
AA5
A
188 193Right-handed 310
Helix 6
AA6
A
194 206Right-handed alpha
Helix 7
AA7
A
214 220Right-handed 310
Helix 8
AA8
A
229 234Right-handed alpha
Helix 9
AA9
A
236 246Right-handed alpha
Helix 10
AB1
A
260 265Right-handed 310
Helix 11
AB2
A
275 291Right-handed alpha
Helix 12
AB3
A
294 302Right-handed alpha
Helix 13
AB4
A
305 313Right-handed alpha
Helix 14
AB5
A
316 324Right-handed alpha
Helix 15
AB6
A
327 341Right-handed alpha
Helix 16
AB7
A
349 354Right-handed alpha
Helix 17
AB8
A
357 373Right-handed alpha
Helix 18
AB9
A
390 397Right-handed alpha
Helix 19
AC1
A
411 423Right-handed alpha
Helix 20
AC2
A
425 432Right-handed alpha
Helix 21
AC3
A
450 452Right-handed 310
Helix 22
AC4
A
453 460Right-handed alpha
Helix 23
AC5
A
486 497Right-handed alpha
Helix 24
AC6
A
508 512Right-handed 310
Helix 25
AC7
A
527 531Right-handed 310
Helix 26
AC8
A
557 570Right-handed alpha
Helix 27
AC9
A
571 576Right-handed alpha
Helix 28
AD1
A
587 596Right-handed alpha
Helix 29
AD2
A
608 618Right-handed alpha
Helix 30
AD3
A
619 622Right-handed 310
Helix 31
AD4
A
665 669Right-handed 310
Helix 32
AD5
A
706 713Right-handed alpha
Helix 33
AD6
A
715 719Right-handed 310
Helix 34
AD7
A
720 727Right-handed alpha
Helix 35
AD8
A
738 747Right-handed alpha
Helix 36
AD9
A
779 783Right-handed 310
Helix 37
AE1
A
801 806Right-handed alpha
Helix 38
AE2
A
808 812Right-handed 310
Helix 39
AE3
A
831 834Right-handed 310
Helix 40
AE4
A
835 840Right-handed alpha
Helix 41
AE5
A
850 858Right-handed alpha
Helix 42
AE6
A
905 909Right-handed 310
Helix 43
AE7
A
921 925Right-handed 310
Helix 44
AE8
B
17 27Right-handed alpha
Helix 45
AE9
B
28 31Right-handed 310
Helix 46
AF1
B
64 69Right-handed alpha
Helix 47
AF2
B
133 140Right-handed alpha
Helix 48
AF3
B
144 148Right-handed 310
Helix 49
AF4
B
151 156Right-handed alpha
Helix 50
AF5
B
166 180Right-handed alpha
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There are 10 sheets in PDB entry 9VAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 67first strand
Strand 2
A
76 82anti-parallel
Strand 3
A
85 91anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
129 132first strand
Strand 2
A
123 126anti-parallel
Strand 3
A
520 523anti-parallel
Strand 4
A
499 503parallel
Strand 5
A
473 477parallel
Strand 6
A
158 161parallel
Strand 7
A
186 187parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 269first strand
Strand 2
A
250 254parallel
Strand 3
A
222 226parallel
Strand 4
A
344 348parallel
Strand 5
A
381 384parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 536first strand
Strand 2
A
542 545anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
581 582first strand
Strand 2
A
585 586anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
792 793first strand
Strand 2
A
798 799anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
815 820first strand
Strand 2
A
889 893parallel
Strand 3
A
846 849anti-parallel
Strand 4
A
874 881parallel
Strand 5
A
864 868anti-parallel
Strand 6
A
942 948anti-parallel
Strand 7
A
815 820anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
162 165anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
52 55anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
74 76first strand
Strand 2
B
82 84anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il