Analysis of interatomic Contacts of Structural Units in PDB entry:
9VAW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VAW entry

There are 6 chains in PDB entry 9VAW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	PRO 50	CYS 381
L	LYS 8	LEU 13
A	SER 9	VAL 359
B	GLU 3	ASN 340
C	THR 6	ARG 62
D	ASP 1	LEU 235

There are 31 helices in PDB entry 9VAW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	59	90	Right-handed alpha
Helix 2	AA2	R	100	127	Right-handed alpha
Helix 3	AA3	R	137	172	Right-handed alpha
Helix 4	AA4	R	172	180	Right-handed alpha
Helix 5	AA5	R	181	201	Right-handed alpha
Helix 6	AA6	R	201	206	Right-handed alpha
Helix 7	AA7	R	218	220	Right-handed 310
Helix 8	AA8	R	229	245	Right-handed alpha
Helix 9	AA9	R	245	273	Right-handed alpha
Helix 10	AB1	R	293	329	Right-handed alpha
Helix 11	AB2	R	335	365	Right-handed alpha
Helix 12	AB3	R	368	381	Right-handed alpha
Helix 13	AB4	A	12	37	Right-handed alpha
Helix 14	AB5	A	51	63	Right-handed alpha
Helix 15	AB6	A	212	221	Right-handed 310
Helix 16	AB7	A	233	235	Right-handed 310
Helix 17	AB8	A	246	261	Right-handed alpha
Helix 18	AB9	A	262	265	Right-handed 310
Helix 19	AC1	A	275	283	Right-handed alpha
Helix 20	AC2	A	301	316	Right-handed alpha
Helix 21	AC3	A	335	356	Right-handed alpha
Helix 22	AC4	B	4	26	Right-handed alpha
Helix 23	AC5	B	29	34	Right-handed alpha
Helix 24	AC6	C	7	24	Right-handed alpha
Helix 25	AC7	C	29	45	Right-handed alpha
Helix 26	AC8	C	46	48	Right-handed 310
Helix 27	AC9	D	28	32	Right-handed 310
Helix 28	AD1	D	62	65	Right-handed 310
Helix 29	AD2	D	74	76	Right-handed 310
Helix 30	AD3	D	87	91	Right-handed 310
Helix 31	AD4	D	208	212	Right-handed 310

There are 15 sheets in PDB entry 9VAW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	207	211	first strand
Strand 2	R	222	226	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	195	first strand
Strand 2	A	200	205	anti-parallel
Strand 3	A	39	45	parallel
Strand 4	A	225	231	parallel
Strand 5	A	268	274	parallel
Strand 6	A	324	328	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	99	anti-parallel
Strand 4	D	110	111	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	143	149	anti-parallel
Strand 3	D	199	204	anti-parallel
Strand 4	D	191	195	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	231	234	parallel
Strand 3	D	213	219	anti-parallel
Strand 4	D	162	167	anti-parallel
Strand 5	D	174	178	anti-parallel
Strand 6	D	182	183	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	231	234	parallel
Strand 3	D	213	219	anti-parallel
Strand 4	D	226	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VAW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VAW