Analysis of interatomic Contacts of Structural Units in PDB entry:
9VB3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VB3 entry

There are 6 chains in PDB entry 9VB3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	PRO 50	PHE 375
L	LYS 8	LEU 13
A	THR 4	PHE 354
B	GLU 3	ASN 340
C	ILE 9	PHE 61
D	VAL 2	LEU 235

There are 32 helices in PDB entry 9VB3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	59	89	Right-handed alpha
Helix 2	AA2	R	101	119	Right-handed alpha
Helix 3	AA3	R	119	128	Right-handed alpha
Helix 4	AA4	R	137	172	Right-handed alpha
Helix 5	AA5	R	172	180	Right-handed alpha
Helix 6	AA6	R	181	206	Right-handed alpha
Helix 7	AA7	R	229	245	Right-handed alpha
Helix 8	AA8	R	245	273	Right-handed alpha
Helix 9	AA9	R	294	329	Right-handed alpha
Helix 10	AB1	R	335	365	Right-handed alpha
Helix 11	AB2	R	370	375	Right-handed alpha
Helix 12	AB3	A	6	32	Right-handed alpha
Helix 13	AB4	A	49	58	Right-handed alpha
Helix 14	AB5	A	62	92	Right-handed alpha
Helix 15	AB6	A	97	117	Right-handed alpha
Helix 16	AB7	A	120	134	Right-handed alpha
Helix 17	AB8	A	134	141	Right-handed alpha
Helix 18	AB9	A	152	158	Right-handed alpha
Helix 19	AC1	A	158	163	Right-handed alpha
Helix 20	AC2	A	170	174	Right-handed 310
Helix 21	AC3	A	207	216	Right-handed 310
Helix 22	AC4	A	228	232	Right-handed 310
Helix 23	AC5	A	241	255	Right-handed alpha
Helix 24	AC6	A	270	279	Right-handed alpha
Helix 25	AC7	A	282	286	Right-handed 310
Helix 26	AC8	A	295	309	Right-handed alpha
Helix 27	AC9	A	330	347	Right-handed alpha
Helix 28	AD1	B	4	26	Right-handed alpha
Helix 29	AD2	B	29	34	Right-handed alpha
Helix 30	AD3	C	10	24	Right-handed alpha
Helix 31	AD4	C	29	45	Right-handed alpha
Helix 32	AD5	D	28	32	Right-handed 310

There are 15 sheets in PDB entry 9VB3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	209	211	first strand
Strand 2	R	222	224	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	37	first strand
Strand 2	A	194	200	parallel
Strand 3	A	185	191	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	220	226	parallel
Strand 3	A	263	269	parallel
Strand 4	A	322	323	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	329	anti-parallel
Strand 4	B	318	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	294	297	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	72	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	95	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	49	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	115	119	parallel
Strand 3	D	92	95	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	98	99	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	144	149	anti-parallel
Strand 3	D	200	203	anti-parallel
Strand 4	D	192	195	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	136	first strand
Strand 2	D	231	234	parallel
Strand 3	D	214	219	anti-parallel
Strand 4	D	162	167	anti-parallel
Strand 5	D	175	178	anti-parallel
Strand 6	D	182	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VB3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VB3