Analysis of interatomic Contacts of Structural Units in PDB entry:
9VB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VB8 entry

There are 88 chains in PDB entry 9VB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 140GLY 337
B
 GLY 2PRO 3
B
 GLY 5PRO 6
B
 GLY 8PRO 9
B
 GLY 11PHE 12
B
 GLY 14PRO 18
B
 GLY 20PRO 21
B
 GLY 23PRO 24
C
 GLY 2PRO 3
C
 GLY 5PRO 6
C
 GLY 8PRO 9
C
 GLY 11PHE 12
C
 GLY 14PRO 18
C
 GLY 20PRO 21
C
 GLY 23PRO 24
D
 GLY 2PRO 3
D
 GLY 5PRO 6
D
 GLY 8PRO 9
D
 GLY 11PHE 12
D
 GLY 14PRO 18
D
 GLY 20PRO 21
D
 GLY 23PRO 24
E
 SER 140GLY 337
F
 GLY 2PRO 3
F
 GLY 5PRO 6
F
 GLY 8PRO 9
F
 GLY 11PHE 12
F
 GLY 14PRO 18
F
 GLY 20PRO 21
F
 GLY 23PRO 24
G
 GLY 2PRO 3
G
 GLY 5PRO 6
G
 GLY 8PRO 9
G
 GLY 11PHE 12
G
 GLY 14PRO 18
G
 GLY 20PRO 21
G
 GLY 23PRO 24
H
 GLY 2PRO 3
H
 GLY 5PRO 6
H
 GLY 8PRO 9
H
 GLY 11PHE 12
H
 GLY 14PRO 18
H
 GLY 20PRO 21
H
 GLY 23PRO 24
I
 SER 140GLY 337
J
 GLY 2PRO 3
J
 GLY 5PRO 6
J
 GLY 8PRO 9
J
 GLY 11PHE 12
J
 GLY 14PRO 18
J
 GLY 20PRO 21
J
 GLY 23PRO 24
K
 GLY 2PRO 3
K
 GLY 5PRO 6
K
 GLY 8PRO 9
K
 GLY 11PHE 12
K
 GLY 14PRO 18
K
 GLY 20PRO 21
K
 GLY 23PRO 24
L
 GLY 2PRO 3
L
 GLY 5PRO 6
L
 GLY 8PRO 9
L
 GLY 11PHE 12
L
 GLY 14PRO 18
L
 GLY 20PRO 21
L
 GLY 23PRO 24
M
 SER 140GLY 337
N
 GLY 2PRO 3
N
 GLY 5PRO 6
N
 GLY 8PRO 9
N
 GLY 11PHE 12
N
 GLY 14PRO 18
N
 GLY 20PRO 21
N
 GLY 23PRO 24
O
 GLY 2PRO 3
O
 GLY 5PRO 6
O
 GLY 8PRO 9
O
 GLY 11PHE 12
O
 GLY 14PRO 18
O
 GLY 20PRO 21
O
 GLY 23PRO 24
P
 GLY 2PRO 3
P
 GLY 5PRO 6
P
 GLY 8PRO 9
P
 GLY 11PHE 12
P
 GLY 14PRO 18
P
 GLY 20PRO 21
P
 GLY 23PRO 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9VB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
158 172Right-handed alpha
Helix 2
AA2
A
202 213Right-handed alpha
Helix 3
AA3
A
222 234Right-handed alpha
Helix 4
AA4
A
259 261Right-handed 310
Helix 5
AA5
A
262 273Right-handed alpha
Helix 6
AA6
A
283 289Right-handed alpha
Helix 7
AA7
A
293 304Right-handed alpha
Helix 8
AA8
A
307 311Right-handed alpha
Helix 9
AA9
A
317 320Right-handed 310
Helix 10
AB1
A
321 334Right-handed alpha
Helix 11
AB2
E
158 172Right-handed alpha
Helix 12
AB3
E
202 213Right-handed alpha
Helix 13
AB4
E
222 234Right-handed alpha
Helix 14
AB5
E
259 261Right-handed 310
Helix 15
AB6
E
262 273Right-handed alpha
Helix 16
AB7
E
283 289Right-handed alpha
Helix 17
AB8
E
293 304Right-handed alpha
Helix 18
AB9
E
307 311Right-handed alpha
Helix 19
AC1
E
317 323Right-handed 310
Helix 20
AC2
E
324 334Right-handed alpha
Helix 21
AC3
I
158 172Right-handed alpha
Helix 22
AC4
I
202 213Right-handed alpha
Helix 23
AC5
I
222 234Right-handed alpha
Helix 24
AC6
I
236 240Right-handed 310
Helix 25
AC7
I
259 261Right-handed 310
Helix 26
AC8
I
262 273Right-handed alpha
Helix 27
AC9
I
283 289Right-handed alpha
Helix 28
AD1
I
293 304Right-handed alpha
Helix 29
AD2
I
307 311Right-handed alpha
Helix 30
AD3
I
317 323Right-handed 310
Helix 31
AD4
I
324 334Right-handed alpha
Helix 32
AD5
M
158 172Right-handed alpha
Helix 33
AD6
M
202 213Right-handed alpha
Helix 34
AD7
M
222 234Right-handed alpha
Helix 35
AD8
M
259 261Right-handed 310
Helix 36
AD9
M
262 273Right-handed alpha
Helix 37
AE1
M
283 289Right-handed alpha
Helix 38
AE2
M
293 304Right-handed alpha
Helix 39
AE3
M
307 311Right-handed alpha
Helix 40
AE4
M
318 323Right-handed 310
Helix 41
AE5
M
324 334Right-handed alpha
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There are 4 sheets in PDB entry 9VB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
180 187anti-parallel
Strand 3
A
144 151parallel
Strand 4
A
246 253parallel
Strand 5
A
275 282parallel
Strand 6
A
312 315parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
191 195first strand
Strand 2
E
180 187anti-parallel
Strand 3
E
144 151parallel
Strand 4
E
246 253parallel
Strand 5
E
276 282parallel
Strand 6
E
312 315parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
191 195first strand
Strand 2
I
180 187anti-parallel
Strand 3
I
144 151parallel
Strand 4
I
246 253parallel
Strand 5
I
275 282parallel
Strand 6
I
312 315parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
191 195first strand
Strand 2
M
180 187anti-parallel
Strand 3
M
144 151parallel
Strand 4
M
246 253parallel
Strand 5
M
276 282parallel
Strand 6
M
312 315parallel
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