Analysis of interatomic Contacts of Structural Units in PDB entry:
9VBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VBD entry

There is 1 chain in PDB entry 9VBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 26SER 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9VBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 40Right-handed alpha
Helix 2
AA2
A
82 88Right-handed 310
Helix 3
AA3
A
108 113Right-handed 310
Helix 4
AA4
A
131 137Right-handed 310
Helix 5
AA5
A
155 161Right-handed 310
Helix 6
AA6
A
188 192Right-handed 310
Helix 7
AA7
A
210 214Right-handed 310
Helix 8
AA8
A
235 241Right-handed 310
Helix 9
AA9
A
260 265Right-handed 310
Helix 10
AB1
A
308 313Right-handed 310
Helix 11
AB2
A
332 336Right-handed 310
Helix 12
AB3
A
392 396Right-handed 310
Helix 13
AB4
A
402 406Right-handed 310
Helix 14
AB5
A
457 474Right-handed alpha
Helix 15
AB6
A
510 523Right-handed alpha
Helix 16
AB7
A
529 533Right-handed 310
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There are 5 sheets in PDB entry 9VBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
66 71anti-parallel
Strand 3
A
93 95parallel
Strand 4
A
118 120parallel
Strand 5
A
142 144parallel
Strand 6
A
166 168parallel
Strand 7
A
197 199parallel
Strand 8
A
222 224parallel
Strand 9
A
246 248parallel
Strand 10
A
270 272parallel
Strand 11
A
293 295parallel
Strand 12
A
318 320parallel
Strand 13
A
342 344parallel
Strand 14
A
366 368parallel
Strand 15
A
386 388parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
204 205parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
253 257parallel
Strand 3
A
277 279parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 328first strand
Strand 2
A
349 354parallel
Strand 3
A
373 377parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 488first strand
Strand 2
A
495 503anti-parallel
Strand 3
A
440 446anti-parallel
Strand 4
A
535 539anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il