Analysis of interatomic Contacts of Structural Units in PDB entry:
9VBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VBG entry

There are 2 chains in PDB entry 9VBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 74GLU 492
B
 PRO 74GLU 492
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9VBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 115Right-handed alpha
Helix 2
AA2
A
130 135Right-handed alpha
Helix 3
AA3
A
138 140Right-handed 310
Helix 4
AA4
A
141 155Right-handed alpha
Helix 5
AA5
A
156 158Right-handed 310
Helix 6
AA6
A
174 184Right-handed alpha
Helix 7
AA7
A
191 196Right-handed alpha
Helix 8
AA8
A
221 226Right-handed alpha
Helix 9
AA9
A
237 256Right-handed alpha
Helix 10
AB1
A
266 270Right-handed 310
Helix 11
AB2
A
296 300Right-handed 310
Helix 12
AB3
A
307 318Right-handed alpha
Helix 13
AB4
A
343 356Right-handed alpha
Helix 14
AB5
A
373 383Right-handed alpha
Helix 15
AB6
A
403 408Right-handed alpha
Helix 16
AB7
A
455 469Right-handed alpha
Helix 17
AB8
B
104 115Right-handed alpha
Helix 18
AB9
B
130 135Right-handed alpha
Helix 19
AC1
B
138 140Right-handed 310
Helix 20
AC2
B
141 155Right-handed alpha
Helix 21
AC3
B
156 158Right-handed 310
Helix 22
AC4
B
174 184Right-handed alpha
Helix 23
AC5
B
191 196Right-handed alpha
Helix 24
AC6
B
221 226Right-handed alpha
Helix 25
AC7
B
237 256Right-handed alpha
Helix 26
AC8
B
266 270Right-handed 310
Helix 27
AC9
B
296 300Right-handed 310
Helix 28
AD1
B
307 318Right-handed alpha
Helix 29
AD2
B
343 356Right-handed alpha
Helix 30
AD3
B
373 383Right-handed alpha
Helix 31
AD4
B
403 408Right-handed alpha
Helix 32
AD5
B
455 469Right-handed alpha
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There are 10 sheets in PDB entry 9VBG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
231 235anti-parallel
Strand 3
A
211 215anti-parallel
Strand 4
A
204 207anti-parallel
Strand 5
A
119 124anti-parallel
Strand 6
A
160 166parallel
Strand 7
A
186 190parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
219 220parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 283first strand
Strand 2
A
286 295anti-parallel
Strand 3
A
305 306parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 283first strand
Strand 2
A
286 295anti-parallel
Strand 3
A
443 450anti-parallel
Strand 4
A
425 429anti-parallel
Strand 5
A
419 422anti-parallel
Strand 6
A
321 326anti-parallel
Strand 7
A
359 365parallel
Strand 8
A
392 398parallel
Strand 9
A
473 475anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
340 341anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
231 235anti-parallel
Strand 3
B
211 215anti-parallel
Strand 4
B
204 207anti-parallel
Strand 5
B
119 124anti-parallel
Strand 6
B
160 166parallel
Strand 7
B
186 190parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
219 220parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 283first strand
Strand 2
B
286 295anti-parallel
Strand 3
B
305 306parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 283first strand
Strand 2
B
286 295anti-parallel
Strand 3
B
443 450anti-parallel
Strand 4
B
425 429anti-parallel
Strand 5
B
419 422anti-parallel
Strand 6
B
321 326anti-parallel
Strand 7
B
359 365parallel
Strand 8
B
392 398parallel
Strand 9
B
473 475anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
340 341anti-parallel
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