Analysis of interatomic Contacts of Structural Units in PDB entry:
9VBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VBH entry

There are 4 chains in PDB entry 9VBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 74VAL 493
B
 T 0 T 3
C
 PRO 74VAL 493
D
 T 0 T 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9VBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
104 115Right-handed alpha
Helix 2
AA2
A
138 140Right-handed 310
Helix 3
AA3
A
141 155Right-handed alpha
Helix 4
AA4
A
174 184Right-handed alpha
Helix 5
AA5
A
191 196Right-handed alpha
Helix 6
AA6
A
237 255Right-handed alpha
Helix 7
AA7
A
296 300Right-handed 310
Helix 8
AA8
A
307 318Right-handed alpha
Helix 9
AA9
A
343 356Right-handed alpha
Helix 10
AB1
A
373 383Right-handed alpha
Helix 11
AB2
A
403 408Right-handed alpha
Helix 12
AB3
A
435 440Right-handed alpha
Helix 13
AB4
A
455 469Right-handed alpha
Helix 14
AB5
C
104 115Right-handed alpha
Helix 15
AB6
C
138 140Right-handed 310
Helix 16
AB7
C
141 155Right-handed alpha
Helix 17
AB8
C
174 184Right-handed alpha
Helix 18
AB9
C
191 196Right-handed alpha
Helix 19
AC1
C
237 255Right-handed alpha
Helix 20
AC2
C
296 300Right-handed 310
Helix 21
AC3
C
307 318Right-handed alpha
Helix 22
AC4
C
343 356Right-handed alpha
Helix 23
AC5
C
373 383Right-handed alpha
Helix 24
AC6
C
403 408Right-handed alpha
Helix 25
AC7
C
435 440Right-handed alpha
Helix 26
AC8
C
455 469Right-handed alpha
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There are 12 sheets in PDB entry 9VBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
231 235anti-parallel
Strand 3
A
211 215anti-parallel
Strand 4
A
204 207anti-parallel
Strand 5
A
119 124anti-parallel
Strand 6
A
160 166parallel
Strand 7
A
186 190parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
219 220parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
414 415parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 283first strand
Strand 2
A
286 295anti-parallel
Strand 3
A
305 306parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 283first strand
Strand 2
A
286 295anti-parallel
Strand 3
A
443 449anti-parallel
Strand 4
A
426 429anti-parallel
Strand 5
A
419 422anti-parallel
Strand 6
A
321 326anti-parallel
Strand 7
A
359 365parallel
Strand 8
A
392 398parallel
Strand 9
A
473 475anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 330first strand
Strand 2
A
433 434parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 86first strand
Strand 2
C
231 235anti-parallel
Strand 3
C
211 215anti-parallel
Strand 4
C
204 207anti-parallel
Strand 5
C
119 124anti-parallel
Strand 6
C
160 166parallel
Strand 7
C
186 190parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 128first strand
Strand 2
C
219 220parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 228first strand
Strand 2
C
414 415parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 283first strand
Strand 2
C
286 295anti-parallel
Strand 3
C
305 306parallel
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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 283first strand
Strand 2
C
286 295anti-parallel
Strand 3
C
443 449anti-parallel
Strand 4
C
426 429anti-parallel
Strand 5
C
419 422anti-parallel
Strand 6
C
321 326anti-parallel
Strand 7
C
359 365parallel
Strand 8
C
392 398parallel
Strand 9
C
473 475anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
329 330first strand
Strand 2
C
433 434parallel
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