Analysis of interatomic Contacts of Structural Units in PDB entry:
9VBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VBM entry

There are 2 chains in PDB entry 9VBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3MET 603
A
 PHE 605VAL 753
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9VBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
20 40Right-handed alpha
Helix 3
AA3
A
62 71Right-handed alpha
Helix 4
AA4
A
72 84Right-handed alpha
Helix 5
AA5
A
86 91Right-handed alpha
Helix 6
AA6
A
102 119Right-handed alpha
Helix 7
AA7
A
215 220Right-handed alpha
Helix 8
AA8
A
230 257Right-handed alpha
Helix 9
AA9
A
262 268Right-handed 310
Helix 10
AB1
A
281 292Right-handed alpha
Helix 11
AB2
A
296 308Right-handed alpha
Helix 12
AB3
A
316 320Right-handed 310
Helix 13
AB4
A
325 332Right-handed alpha
Helix 14
AB5
A
335 350Right-handed alpha
Helix 15
AB6
A
366 373Right-handed alpha
Helix 16
AB7
A
381 391Right-handed alpha
Helix 17
AB8
A
423 431Right-handed alpha
Helix 18
AB9
A
434 438Right-handed 310
Helix 19
AC1
A
439 450Right-handed 310
Helix 20
AC2
A
452 478Right-handed alpha
Helix 21
AC3
A
504 517Right-handed alpha
Helix 22
AC4
A
537 554Right-handed alpha
Helix 23
AC5
A
573 581Right-handed alpha
Helix 24
AC6
A
582 584Right-handed 310
Helix 25
AC7
A
601 608Right-handed alpha
Helix 26
AC8
A
618 628Right-handed alpha
Helix 27
AC9
A
638 649Right-handed alpha
Helix 28
AD1
A
653 660Right-handed alpha
Helix 29
AD2
A
660 668Right-handed alpha
Helix 30
AD3
A
682 693Right-handed alpha
Helix 31
AD4
A
702 715Right-handed alpha
Helix 32
AD5
A
719 733Right-handed alpha
Helix 33
AD6
A
738 750Right-handed alpha
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There are 6 sheets in PDB entry 9VBM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
172 183anti-parallel
Strand 3
A
165 167anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
172 183anti-parallel
Strand 3
A
189 197anti-parallel
Strand 4
A
122 127parallel
Strand 5
A
49 53parallel
Strand 6
A
270 274parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
143 146anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
377 378parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 324first strand
Strand 2
A
363 365anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 568first strand
Strand 2
A
525 530parallel
Strand 3
A
487 492parallel
Strand 4
A
586 589parallel
Strand 5
A
611 615parallel
Strand 6
A
633 635parallel
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