Analysis of interatomic Contacts of Structural Units in PDB entry:
9VBN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VBN entry

There are 3 chains in PDB entry 9VBN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 8ARG 512
B
 GLU 9ARG 512
C
 GLU 9ARG 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 89 helices in PDB entry 9VBN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 35Right-handed alpha
Helix 2
AA2
A
35 54Right-handed alpha
Helix 3
AA3
A
55 74Right-handed alpha
Helix 4
AA4
A
75 80Right-handed 310
Helix 5
AA5
A
97 105Right-handed alpha
Helix 6
AA6
A
106 111Right-handed 310
Helix 7
AA7
A
118 123Right-handed alpha
Helix 8
AA8
A
131 146Right-handed alpha
Helix 9
AA9
A
147 167Right-handed alpha
Helix 10
AB1
A
174 177Right-handed 310
Helix 11
AB2
A
178 183Right-handed alpha
Helix 12
AB3
A
184 187Right-handed 310
Helix 13
AB4
A
188 225Right-handed alpha
Helix 14
AB5
A
230 251Right-handed alpha
Helix 15
AB6
A
253 278Right-handed alpha
Helix 16
AB7
A
282 299Right-handed alpha
Helix 17
AB8
A
299 304Right-handed alpha
Helix 18
AB9
A
312 319Right-handed alpha
Helix 19
AC1
A
319 340Right-handed alpha
Helix 20
AC2
A
346 355Right-handed alpha
Helix 21
AC3
A
356 379Right-handed alpha
Helix 22
AC4
A
381 391Right-handed alpha
Helix 23
AC5
A
392 396Right-handed 310
Helix 24
AC6
A
405 419Right-handed alpha
Helix 25
AC7
A
421 436Right-handed alpha
Helix 26
AC8
A
447 469Right-handed alpha
Helix 27
AC9
A
470 482Right-handed alpha
Helix 28
AD1
A
483 512Right-handed alpha
Helix 29
AD2
B
14 35Right-handed alpha
Helix 30
AD3
B
35 54Right-handed alpha
Helix 31
AD4
B
55 74Right-handed alpha
Helix 32
AD5
B
75 80Right-handed 310
Helix 33
AD6
B
97 105Right-handed alpha
Helix 34
AD7
B
107 112Right-handed alpha
Helix 35
AD8
B
115 123Right-handed alpha
Helix 36
AD9
B
131 146Right-handed alpha
Helix 37
AE1
B
147 167Right-handed alpha
Helix 38
AE2
B
174 177Right-handed 310
Helix 39
AE3
B
178 183Right-handed alpha
Helix 40
AE4
B
184 187Right-handed 310
Helix 41
AE5
B
188 226Right-handed alpha
Helix 42
AE6
B
230 252Right-handed alpha
Helix 43
AE7
B
253 256Right-handed 310
Helix 44
AE8
B
257 278Right-handed alpha
Helix 45
AE9
B
280 299Right-handed alpha
Helix 46
AF1
B
299 304Right-handed alpha
Helix 47
AF2
B
312 319Right-handed alpha
Helix 48
AF3
B
319 340Right-handed alpha
Helix 49
AF4
B
346 355Right-handed alpha
Helix 50
AF5
B
356 379Right-handed alpha
Helix 51
AF6
B
382 391Right-handed alpha
Helix 52
AF7
B
392 394Right-handed 310
Helix 53
AF8
B
395 400Right-handed alpha
Helix 54
AF9
B
405 421Right-handed alpha
Helix 55
AG1
B
421 436Right-handed alpha
Helix 56
AG2
B
447 469Right-handed alpha
Helix 57
AG3
B
470 482Right-handed alpha
Helix 58
AG4
B
483 512Right-handed alpha
Helix 59
AG5
C
16 35Right-handed alpha
Helix 60
AG6
C
35 54Right-handed alpha
Helix 61
AG7
C
55 74Right-handed alpha
Helix 62
AG8
C
75 80Right-handed 310
Helix 63
AG9
C
92 97Right-handed alpha
Helix 64
AH1
C
97 105Right-handed alpha
Helix 65
AH2
C
107 112Right-handed alpha
Helix 66
AH3
C
115 123Right-handed alpha
Helix 67
AH4
C
131 146Right-handed alpha
Helix 68
AH5
C
147 167Right-handed alpha
Helix 69
AH6
C
174 177Right-handed 310
Helix 70
AH7
C
178 183Right-handed alpha
Helix 71
AH8
C
184 187Right-handed 310
Helix 72
AH9
C
188 226Right-handed alpha
Helix 73
AI1
C
230 251Right-handed alpha
Helix 74
AI2
C
253 258Right-handed 310
Helix 75
AI3
C
259 277Right-handed alpha
Helix 76
AI4
C
280 297Right-handed alpha
Helix 77
AI5
C
299 304Right-handed alpha
Helix 78
AI6
C
312 317Right-handed alpha
Helix 79
AI7
C
319 341Right-handed alpha
Helix 80
AI8
C
346 354Right-handed alpha
Helix 81
AI9
C
356 379Right-handed alpha
Helix 82
AJ1
C
383 391Right-handed alpha
Helix 83
AJ2
C
392 394Right-handed 310
Helix 84
AJ3
C
395 403Right-handed alpha
Helix 85
AJ4
C
405 422Right-handed alpha
Helix 86
AJ5
C
423 436Right-handed alpha
Helix 87
AJ6
C
447 469Right-handed alpha
Helix 88
AJ7
C
470 482Right-handed alpha
Helix 89
AJ8
C
483 512Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9VBN.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
437 438anti-parallel
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