Analysis of interatomic Contacts of Structural Units in PDB entry:
9VBO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VBO entry

There are 10 chains in PDB entry 9VBO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 5	ILE 359
B	GLN 5	PRO 351
C	GLN 5	PRO 351
D	GLN 5	ILE 359
H	MET 1	LYS 146
E	ILE 3	ASN 86
E	ALA 88	TYR 403
F	ILE 3	ASN 86
F	ALA 88	TYR 403
G	MET 1	LYS 146

There are115 helices in PDB entry 9VBO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	30	Right-handed alpha
Helix 2	AA2	A	33	40	Right-handed alpha
Helix 3	AA3	A	54	69	Right-handed alpha
Helix 4	AA4	A	73	75	Right-handed 310
Helix 5	AA5	A	93	101	Right-handed alpha
Helix 6	AA6	A	115	117	Right-handed 310
Helix 7	AA7	A	118	133	Right-handed alpha
Helix 8	AA8	A	146	151	Right-handed 310
Helix 9	AA9	A	157	161	Right-handed 310
Helix 10	AB1	A	209	216	Right-handed alpha
Helix 11	AB2	A	216	233	Right-handed alpha
Helix 12	AB3	A	235	239	Right-handed 310
Helix 13	AB4	A	248	256	Right-handed alpha
Helix 14	AB5	A	278	292	Right-handed alpha
Helix 15	AB6	A	324	330	Right-handed alpha
Helix 16	AB7	A	337	345	Right-handed alpha
Helix 17	AB8	B	22	30	Right-handed alpha
Helix 18	AB9	B	33	40	Right-handed alpha
Helix 19	AC1	B	54	69	Right-handed alpha
Helix 20	AC2	B	73	75	Right-handed 310
Helix 21	AC3	B	93	103	Right-handed alpha
Helix 22	AC4	B	115	117	Right-handed 310
Helix 23	AC5	B	118	133	Right-handed alpha
Helix 24	AC6	B	146	151	Right-handed 310
Helix 25	AC7	B	209	216	Right-handed alpha
Helix 26	AC8	B	216	233	Right-handed alpha
Helix 27	AC9	B	235	239	Right-handed 310
Helix 28	AD1	B	248	256	Right-handed alpha
Helix 29	AD2	B	278	292	Right-handed alpha
Helix 30	AD3	B	324	330	Right-handed alpha
Helix 31	AD4	B	337	345	Right-handed alpha
Helix 32	AD5	C	22	30	Right-handed alpha
Helix 33	AD6	C	33	40	Right-handed alpha
Helix 34	AD7	C	54	69	Right-handed alpha
Helix 35	AD8	C	73	75	Right-handed 310
Helix 36	AD9	C	93	103	Right-handed alpha
Helix 37	AE1	C	115	117	Right-handed 310
Helix 38	AE2	C	118	133	Right-handed alpha
Helix 39	AE3	C	146	151	Right-handed 310
Helix 40	AE4	C	157	161	Right-handed 310
Helix 41	AE5	C	209	216	Right-handed alpha
Helix 42	AE6	C	216	232	Right-handed alpha
Helix 43	AE7	C	235	239	Right-handed 310
Helix 44	AE8	C	248	256	Right-handed alpha
Helix 45	AE9	C	278	290	Right-handed alpha
Helix 46	AF1	C	324	330	Right-handed alpha
Helix 47	AF2	C	337	345	Right-handed alpha
Helix 48	AF3	D	22	30	Right-handed alpha
Helix 49	AF4	D	33	40	Right-handed alpha
Helix 50	AF5	D	54	69	Right-handed alpha
Helix 51	AF6	D	73	75	Right-handed 310
Helix 52	AF7	D	93	103	Right-handed alpha
Helix 53	AF8	D	115	117	Right-handed 310
Helix 54	AF9	D	118	133	Right-handed alpha
Helix 55	AG1	D	146	151	Right-handed 310
Helix 56	AG2	D	157	161	Right-handed 310
Helix 57	AG3	D	209	216	Right-handed alpha
Helix 58	AG4	D	216	232	Right-handed alpha
Helix 59	AG5	D	235	239	Right-handed 310
Helix 60	AG6	D	248	256	Right-handed alpha
Helix 61	AG7	D	278	292	Right-handed alpha
Helix 62	AG8	D	324	330	Right-handed alpha
Helix 63	AG9	D	337	345	Right-handed alpha
Helix 64	AH1	H	15	21	Right-handed alpha
Helix 65	AH2	H	21	27	Right-handed alpha
Helix 66	AH3	H	74	78	Right-handed 310
Helix 67	AH4	H	113	118	Right-handed alpha
Helix 68	AH5	E	24	40	Right-handed alpha
Helix 69	AH6	E	43	47	Right-handed 310
Helix 70	AH7	E	56	61	Right-handed alpha
Helix 71	AH8	E	65	74	Right-handed alpha
Helix 72	AH9	E	85	87	Right-handed 310
Helix 73	AI1	E	88	103	Right-handed alpha
Helix 74	AI2	E	116	120	Right-handed 310
Helix 75	AI3	E	122	128	Right-handed alpha
Helix 76	AI4	E	136	140	Right-handed 310
Helix 77	AI5	E	143	150	Right-handed alpha
Helix 78	AI6	E	151	158	Right-handed alpha
Helix 79	AI7	E	160	182	Right-handed alpha
Helix 80	AI8	E	194	200	Right-handed alpha
Helix 81	AI9	E	201	206	Right-handed 310
Helix 82	AJ1	E	247	257	Right-handed 310
Helix 83	AJ2	E	273	288	Right-handed alpha
Helix 84	AJ3	E	290	294	Right-handed 310
Helix 85	AJ4	E	304	313	Right-handed alpha
Helix 86	AJ5	E	320	327	Right-handed alpha
Helix 87	AJ6	E	342	347	Right-handed alpha
Helix 88	AJ7	E	350	352	Right-handed 310
Helix 89	AJ8	E	353	367	Right-handed alpha
Helix 90	AJ9	F	24	40	Right-handed alpha
Helix 91	AK1	F	43	47	Right-handed 310
Helix 92	AK2	F	56	61	Right-handed alpha
Helix 93	AK3	F	65	74	Right-handed alpha
Helix 94	AK4	F	85	87	Right-handed 310
Helix 95	AK5	F	88	103	Right-handed alpha
Helix 96	AK6	F	116	120	Right-handed 310
Helix 97	AK7	F	122	128	Right-handed alpha
Helix 98	AK8	F	136	140	Right-handed 310
Helix 99	AK9	F	143	150	Right-handed alpha
Helix 100	AL1	F	151	158	Right-handed alpha
Helix 101	AL2	F	160	182	Right-handed alpha
Helix 102	AL3	F	194	200	Right-handed alpha
Helix 103	AL4	F	201	206	Right-handed 310
Helix 104	AL5	F	247	257	Right-handed 310
Helix 105	AL6	F	273	288	Right-handed alpha
Helix 106	AL7	F	290	294	Right-handed 310
Helix 107	AL8	F	304	313	Right-handed alpha
Helix 108	AL9	F	320	327	Right-handed alpha
Helix 109	AM1	F	342	347	Right-handed alpha
Helix 110	AM2	F	350	352	Right-handed 310
Helix 111	AM3	F	353	367	Right-handed alpha
Helix 112	AM4	G	15	21	Right-handed alpha
Helix 113	AM5	G	21	27	Right-handed alpha
Helix 114	AM6	G	74	78	Right-handed 310
Helix 115	AM7	G	113	118	Right-handed alpha

There are 18 sheets in PDB entry 9VBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 18 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	244	first strand
Strand 2	A	297	304	parallel
Strand 3	A	308	316	anti-parallel
Strand 4	A	178	187	anti-parallel
Strand 5	A	6	14	anti-parallel
Strand 6	A	164	172	anti-parallel
Strand 7	A	138	145	anti-parallel
Strand 8	A	77	83	parallel
Strand 9	A	109	114	parallel
Strand 10	B	109	114	anti-parallel
Strand 11	B	77	83	parallel
Strand 12	B	138	145	parallel
Strand 13	B	164	172	anti-parallel
Strand 14	B	6	14	anti-parallel
Strand 15	B	178	187	anti-parallel
Strand 16	B	308	316	anti-parallel
Strand 17	B	297	304	anti-parallel
Strand 18	B	241	244	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	48	first strand
Strand 2	A	18	21	anti-parallel
Strand 3	A	334	335	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	194	first strand
Strand 2	A	203	204	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	18	21	anti-parallel
Strand 3	B	334	335	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	194	first strand
Strand 2	B	203	204	anti-parallel

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There are 18 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	241	244	first strand
Strand 2	C	297	304	parallel
Strand 3	C	308	316	anti-parallel
Strand 4	C	178	187	anti-parallel
Strand 5	C	6	14	anti-parallel
Strand 6	C	164	172	anti-parallel
Strand 7	C	138	145	anti-parallel
Strand 8	C	77	83	parallel
Strand 9	C	109	114	parallel
Strand 10	D	109	114	anti-parallel
Strand 11	D	77	83	parallel
Strand 12	D	138	145	parallel
Strand 13	D	164	172	anti-parallel
Strand 14	D	6	14	anti-parallel
Strand 15	D	178	187	anti-parallel
Strand 16	D	308	316	anti-parallel
Strand 17	D	297	304	anti-parallel
Strand 18	D	241	244	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	48	first strand
Strand 2	C	18	21	anti-parallel
Strand 3	C	334	335	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	193	194	first strand
Strand 2	C	203	204	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	48	first strand
Strand 2	D	18	21	anti-parallel
Strand 3	D	334	335	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	194	first strand
Strand 2	D	203	204	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	40	first strand
Strand 2	H	29	33	anti-parallel
Strand 3	H	56	59	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	63	72	first strand
Strand 2	H	88	95	anti-parallel
Strand 3	H	100	106	anti-parallel
Strand 4	H	137	145	parallel
Strand 5	H	121	131	anti-parallel
Strand 6	H	63	72	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	12	first strand
Strand 2	E	213	221	anti-parallel
Strand 3	E	108	115	anti-parallel
Strand 4	E	49	53	parallel
Strand 5	E	79	83	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	243	first strand
Strand 2	E	392	400	anti-parallel
Strand 3	E	380	387	anti-parallel
Strand 4	E	296	298	parallel
Strand 5	E	337	338	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	12	first strand
Strand 2	F	213	221	anti-parallel
Strand 3	F	108	115	anti-parallel
Strand 4	F	49	53	parallel
Strand 5	F	79	83	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	243	first strand
Strand 2	F	392	400	anti-parallel
Strand 3	F	380	387	anti-parallel
Strand 4	F	296	298	parallel
Strand 5	F	337	338	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	40	first strand
Strand 2	G	29	33	anti-parallel
Strand 3	G	56	59	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	72	first strand
Strand 2	G	88	95	anti-parallel
Strand 3	G	100	105	anti-parallel
Strand 4	G	137	145	parallel
Strand 5	G	121	131	anti-parallel
Strand 6	G	63	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VBO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VBO