Analysis of interatomic Contacts of Structural Units in PDB entry:
9VBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VBP entry

There are 3 chains in PDB entry 9VBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 9ARG 512
B
 GLU 9ARG 512
C
 GLU 9ARG 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 9VBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 35Right-handed alpha
Helix 2
AA2
A
35 54Right-handed alpha
Helix 3
AA3
A
54 74Right-handed alpha
Helix 4
AA4
A
75 80Right-handed 310
Helix 5
AA5
A
93 102Right-handed alpha
Helix 6
AA6
A
108 121Right-handed alpha
Helix 7
AA7
A
131 146Right-handed alpha
Helix 8
AA8
A
147 166Right-handed alpha
Helix 9
AA9
A
173 177Right-handed 310
Helix 10
AB1
A
178 183Right-handed alpha
Helix 11
AB2
A
184 187Right-handed 310
Helix 12
AB3
A
188 225Right-handed alpha
Helix 13
AB4
A
230 251Right-handed alpha
Helix 14
AB5
A
253 277Right-handed alpha
Helix 15
AB6
A
280 303Right-handed alpha
Helix 16
AB7
A
312 319Right-handed alpha
Helix 17
AB8
A
319 342Right-handed alpha
Helix 18
AB9
A
346 355Right-handed alpha
Helix 19
AC1
A
356 379Right-handed alpha
Helix 20
AC2
A
382 391Right-handed alpha
Helix 21
AC3
A
395 403Right-handed alpha
Helix 22
AC4
A
405 437Right-handed alpha
Helix 23
AC5
A
447 470Right-handed alpha
Helix 24
AC6
A
470 482Right-handed alpha
Helix 25
AC7
A
482 512Right-handed alpha
Helix 26
AC8
B
14 35Right-handed alpha
Helix 27
AC9
B
35 54Right-handed alpha
Helix 28
AD1
B
54 75Right-handed alpha
Helix 29
AD2
B
76 80Right-handed 310
Helix 30
AD3
B
96 105Right-handed alpha
Helix 31
AD4
B
107 123Right-handed alpha
Helix 32
AD5
B
131 146Right-handed alpha
Helix 33
AD6
B
147 167Right-handed alpha
Helix 34
AD7
B
173 177Right-handed 310
Helix 35
AD8
B
178 183Right-handed alpha
Helix 36
AD9
B
184 187Right-handed 310
Helix 37
AE1
B
188 225Right-handed alpha
Helix 38
AE2
B
230 252Right-handed alpha
Helix 39
AE3
B
255 278Right-handed alpha
Helix 40
AE4
B
280 303Right-handed alpha
Helix 41
AE5
B
312 317Right-handed alpha
Helix 42
AE6
B
319 342Right-handed alpha
Helix 43
AE7
B
346 379Right-handed alpha
Helix 44
AE8
B
382 391Right-handed alpha
Helix 45
AE9
B
392 394Right-handed 310
Helix 46
AF1
B
395 403Right-handed alpha
Helix 47
AF2
B
405 436Right-handed alpha
Helix 48
AF3
B
447 469Right-handed alpha
Helix 49
AF4
B
470 482Right-handed alpha
Helix 50
AF5
B
482 512Right-handed alpha
Helix 51
AF6
C
14 35Right-handed alpha
Helix 52
AF7
C
35 54Right-handed alpha
Helix 53
AF8
C
54 75Right-handed alpha
Helix 54
AF9
C
76 80Right-handed 310
Helix 55
AG1
C
92 105Right-handed alpha
Helix 56
AG2
C
107 123Right-handed alpha
Helix 57
AG3
C
131 146Right-handed alpha
Helix 58
AG4
C
147 167Right-handed alpha
Helix 59
AG5
C
173 177Right-handed 310
Helix 60
AG6
C
178 183Right-handed alpha
Helix 61
AG7
C
184 187Right-handed 310
Helix 62
AG8
C
188 226Right-handed alpha
Helix 63
AG9
C
230 250Right-handed alpha
Helix 64
AH1
C
253 277Right-handed alpha
Helix 65
AH2
C
280 298Right-handed alpha
Helix 66
AH3
C
298 303Right-handed alpha
Helix 67
AH4
C
312 317Right-handed alpha
Helix 68
AH5
C
319 342Right-handed alpha
Helix 69
AH6
C
346 355Right-handed alpha
Helix 70
AH7
C
356 379Right-handed alpha
Helix 71
AH8
C
381 391Right-handed alpha
Helix 72
AH9
C
395 403Right-handed alpha
Helix 73
AI1
C
405 437Right-handed alpha
Helix 74
AI2
C
447 470Right-handed alpha
Helix 75
AI3
C
470 482Right-handed alpha
Helix 76
AI4
C
482 512Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9VBP.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
437 438anti-parallel
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