Analysis of interatomic Contacts of Structural Units in PDB entry:
9VC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VC6 entry

There is 1 chain in PDB entry 9VC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1ASP 773
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9VC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 23Right-handed alpha
Helix 2
AA2
A
25 41Right-handed alpha
Helix 3
AA3
A
45 71Right-handed alpha
Helix 4
AA4
A
117 125Right-handed alpha
Helix 5
AA5
A
152 159Right-handed alpha
Helix 6
AA6
A
181 201Right-handed alpha
Helix 7
AA7
A
202 213Right-handed alpha
Helix 8
AA8
A
216 220Right-handed 310
Helix 9
AA9
A
221 232Right-handed alpha
Helix 10
AB1
A
234 238Right-handed 310
Helix 11
AB2
A
239 258Right-handed alpha
Helix 12
AB3
A
261 273Right-handed alpha
Helix 13
AB4
A
275 283Right-handed alpha
Helix 14
AB5
A
284 300Right-handed alpha
Helix 15
AB6
A
307 323Right-handed alpha
Helix 16
AB7
A
324 328Right-handed 310
Helix 17
AB8
A
329 345Right-handed alpha
Helix 18
AB9
A
345 350Right-handed alpha
Helix 19
AC1
A
355 380Right-handed alpha
Helix 20
AC2
A
386 393Right-handed alpha
Helix 21
AC3
A
393 415Right-handed alpha
Helix 22
AC4
A
419 441Right-handed alpha
Helix 23
AC5
A
454 474Right-handed alpha
Helix 24
AC6
A
476 497Right-handed alpha
Helix 25
AC7
A
498 500Right-handed 310
Helix 26
AC8
A
522 525Right-handed 310
Helix 27
AC9
A
542 546Right-handed 310
Helix 28
AD1
A
552 557Right-handed alpha
Helix 29
AD2
A
557 565Right-handed alpha
Helix 30
AD3
A
585 593Right-handed alpha
Helix 31
AD4
A
608 621Right-handed alpha
Helix 32
AD5
A
653 657Right-handed 310
Helix 33
AD6
A
676 687Right-handed alpha
Helix 34
AD7
A
698 702Right-handed 310
Helix 35
AD8
A
707 715Right-handed alpha
Helix 36
AD9
A
733 743Right-handed alpha
Helix 37
AE1
A
750 754Right-handed alpha
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There are 4 sheets in PDB entry 9VC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 93first strand
Strand 2
A
96 102anti-parallel
Strand 3
A
108 114anti-parallel
Strand 4
A
162 176parallel
Strand 5
A
132 140anti-parallel
Strand 6
A
81 86anti-parallel
Strand 7
A
96 102anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
381 383first strand
Strand 2
A
447 449anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 628first strand
Strand 2
A
594 601parallel
Strand 3
A
569 575parallel
Strand 4
A
527 530parallel
Strand 5
A
517 520anti-parallel
Strand 6
A
504 508anti-parallel
Strand 7
A
756 761anti-parallel
Strand 8
A
764 769anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
633 636first strand
Strand 2
A
639 645anti-parallel
Strand 3
A
659 664anti-parallel
Strand 4
A
667 671anti-parallel
Strand 5
A
694 696parallel
Strand 6
A
718 721parallel
Strand 7
A
746 749parallel
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