Analysis of interatomic Contacts of Structural Units in PDB entry:
9VC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VC8 entry

There is 1 chain in PDB entry 9VC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 90LEU 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 9VC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 103Right-handed alpha
Helix 2
AA2
A
103 113Right-handed alpha
Helix 3
AA3
A
116 134Right-handed alpha
Helix 4
AA4
A
138 151Right-handed alpha
Helix 5
AA5
A
154 157Right-handed 310
Helix 6
AA6
A
158 170Right-handed alpha
Helix 7
AA7
A
171 183Right-handed alpha
Helix 8
AA8
A
187 191Right-handed 310
Helix 9
AA9
A
192 198Right-handed alpha
Helix 10
AB1
A
212 224Right-handed alpha
Helix 11
AB2
A
233 248Right-handed alpha
Helix 12
AB3
A
292 298Right-handed 310
Helix 13
AB4
A
301 312Right-handed alpha
Helix 14
AB5
A
322 324Right-handed 310
Helix 15
AB6
A
325 336Right-handed alpha
Helix 16
AB7
A
360 364Right-handed 310
Helix 17
AB8
A
374 389Right-handed alpha
Helix 18
AB9
A
400 413Right-handed alpha
Helix 19
AC1
A
425 429Right-handed 310
Helix 20
AC2
A
460 470Right-handed alpha
Helix 21
AC3
A
487 500Right-handed alpha
Helix 22
AC4
A
513 524Right-handed alpha
Helix 23
AC5
A
528 540Right-handed alpha
Helix 24
AC6
A
551 562Right-handed alpha
Helix 25
AC7
A
567 576Right-handed alpha
Helix 26
AC8
A
583 600Right-handed alpha
Helix 27
AC9
A
604 613Right-handed alpha
Helix 28
AD1
A
621 643Right-handed alpha
Helix 29
AD2
A
651 672Right-handed alpha
Helix 30
AD3
A
672 682Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9VC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
251 254anti-parallel
Strand 3
A
271 273parallel
Strand 4
A
227 230parallel
Strand 5
A
285 290parallel
Strand 6
A
314 321parallel
Strand 7
A
201 206parallel
Strand 8
A
340 344parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 395first strand
Strand 2
A
420 423parallel
Strand 3
A
369 371parallel
Strand 4
A
437 440parallel
Strand 5
A
482 485parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
454 458anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il