Analysis of interatomic Contacts of Structural Units in PDB entry:
9VCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VCC entry

There are 2 chains in PDB entry 9VCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 50LEU 688
A
 THR 85LEU 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9VCC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
79 85Right-handed alpha
Helix 2
AA2
B
89 103Right-handed alpha
Helix 3
AA3
B
105 113Right-handed alpha
Helix 4
AA4
B
116 134Right-handed alpha
Helix 5
AA5
B
138 151Right-handed alpha
Helix 6
AA6
B
154 170Right-handed alpha
Helix 7
AA7
B
171 183Right-handed alpha
Helix 8
AA8
B
187 191Right-handed 310
Helix 9
AA9
B
192 198Right-handed alpha
Helix 10
AB1
B
212 224Right-handed alpha
Helix 11
AB2
B
233 248Right-handed alpha
Helix 12
AB3
B
292 298Right-handed 310
Helix 13
AB4
B
301 312Right-handed alpha
Helix 14
AB5
B
322 337Right-handed alpha
Helix 15
AB6
B
360 364Right-handed 310
Helix 16
AB7
B
374 389Right-handed alpha
Helix 17
AB8
B
400 413Right-handed alpha
Helix 18
AB9
B
425 429Right-handed 310
Helix 19
AC1
B
460 471Right-handed alpha
Helix 20
AC2
B
487 500Right-handed alpha
Helix 21
AC3
B
513 524Right-handed alpha
Helix 22
AC4
B
528 539Right-handed alpha
Helix 23
AC5
B
553 562Right-handed alpha
Helix 24
AC6
B
567 577Right-handed alpha
Helix 25
AC7
B
583 600Right-handed alpha
Helix 26
AC8
B
604 612Right-handed alpha
Helix 27
AC9
B
621 643Right-handed alpha
Helix 28
AD1
B
651 672Right-handed alpha
Helix 29
AD2
B
672 683Right-handed alpha
Helix 30
AD3
A
89 103Right-handed alpha
Helix 31
AD4
A
103 114Right-handed alpha
Helix 32
AD5
A
116 134Right-handed alpha
Helix 33
AD6
A
138 151Right-handed alpha
Helix 34
AD7
A
159 170Right-handed alpha
Helix 35
AD8
A
170 182Right-handed alpha
Helix 36
AD9
A
188 192Right-handed 310
Helix 37
AE1
A
212 222Right-handed alpha
Helix 38
AE2
A
233 247Right-handed alpha
Helix 39
AE3
A
277 279Right-handed 310
Helix 40
AE4
A
302 311Right-handed alpha
Helix 41
AE5
A
325 337Right-handed alpha
Helix 42
AE6
A
374 388Right-handed alpha
Helix 43
AE7
A
400 412Right-handed alpha
Helix 44
AE8
A
424 428Right-handed 310
Helix 45
AE9
A
460 470Right-handed alpha
Helix 46
AF1
A
487 500Right-handed alpha
Helix 47
AF2
A
513 524Right-handed alpha
Helix 48
AF3
A
528 539Right-handed alpha
Helix 49
AF4
A
551 561Right-handed alpha
Helix 50
AF5
A
567 576Right-handed alpha
Helix 51
AF6
A
583 600Right-handed alpha
Helix 52
AF7
A
604 613Right-handed alpha
Helix 53
AF8
A
621 646Right-handed alpha
Helix 54
AF9
A
651 671Right-handed alpha
Helix 55
AG1
A
672 684Right-handed alpha
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There are 6 sheets in PDB entry 9VCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 275first strand
Strand 2
B
227 231parallel
Strand 3
B
284 290parallel
Strand 4
B
313 320parallel
Strand 5
B
201 206parallel
Strand 6
B
342 344parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 353first strand
Strand 2
B
481 485parallel
Strand 3
B
437 440parallel
Strand 4
B
369 371parallel
Strand 5
B
421 423parallel
Strand 6
B
394 395parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
509 510first strand
Strand 2
B
547 548parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
271 275parallel
Strand 3
A
227 231parallel
Strand 4
A
287 291parallel
Strand 5
A
316 320parallel
Strand 6
A
201 206parallel
Strand 7
A
340 344parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
481 485parallel
Strand 3
A
437 440parallel
Strand 4
A
368 371parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 448first strand
Strand 2
A
454 457anti-parallel
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