Analysis of interatomic Contacts of Structural Units in PDB entry:
9VCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VCF entry

There are 3 chains in PDB entry 9VCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 774
B
 C 1 C 14
C
 G 1 G 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9VCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 15Right-handed alpha
Helix 2
AA2
A
16 18Right-handed 310
Helix 3
AA3
A
23 25Right-handed 310
Helix 4
AA4
A
26 38Right-handed alpha
Helix 5
AA5
A
41 63Right-handed alpha
Helix 6
AA6
A
144 152Right-handed alpha
Helix 7
AA7
A
171 185Right-handed alpha
Helix 8
AA8
A
189 198Right-handed alpha
Helix 9
AA9
A
205 216Right-handed alpha
Helix 10
AB1
A
217 222Right-handed alpha
Helix 11
AB2
A
224 247Right-handed alpha
Helix 12
AB3
A
251 273Right-handed alpha
Helix 13
AB4
A
276 295Right-handed alpha
Helix 14
AB5
A
300 316Right-handed alpha
Helix 15
AB6
A
317 321Right-handed 310
Helix 16
AB7
A
322 341Right-handed alpha
Helix 17
AB8
A
354 384Right-handed alpha
Helix 18
AB9
A
388 405Right-handed alpha
Helix 19
AC1
A
405 424Right-handed alpha
Helix 20
AC2
A
428 451Right-handed alpha
Helix 21
AC3
A
550 555Right-handed alpha
Helix 22
AC4
A
555 564Right-handed alpha
Helix 23
AC5
A
577 582Right-handed alpha
Helix 24
AC6
A
583 591Right-handed alpha
Helix 25
AC7
A
631 635Right-handed 310
Helix 26
AC8
A
654 668Right-handed alpha
Helix 27
AC9
A
680 684Right-handed 310
Helix 28
AD1
A
689 697Right-handed alpha
Helix 29
AD2
A
715 725Right-handed alpha
Helix 30
AD3
A
732 736Right-handed alpha
Helix 31
AD4
A
759 763Right-handed 310
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There are 3 sheets in PDB entry 9VCF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
A
124 133anti-parallel
Strand 3
A
154 162anti-parallel
Strand 4
A
108 114parallel
Strand 5
A
89 96anti-parallel
Strand 6
A
73 85anti-parallel
Strand 7
A
124 133anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 598first strand
Strand 2
A
567 573parallel
Strand 3
A
535 539parallel
Strand 4
A
528 532anti-parallel
Strand 5
A
515 519anti-parallel
Strand 6
A
738 742anti-parallel
Strand 7
A
747 751anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
611 615first strand
Strand 2
A
618 624anti-parallel
Strand 3
A
637 641anti-parallel
Strand 4
A
645 649anti-parallel
Strand 5
A
676 678parallel
Strand 6
A
700 703parallel
Strand 7
A
729 731parallel
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