Analysis of interatomic Contacts of Structural Units in PDB entry:
9VCN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VCN entry

There are 4 chains in PDB entry 9VCN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 18	VAL 338
B	VAL 349	LEU 603
C	ARG 17	VAL 338
D	VAL 349	LEU 603

There are 39 helices in PDB entry 9VCN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	40	Right-handed alpha
Helix 2	AA2	A	52	60	Right-handed alpha
Helix 3	AA3	A	67	73	Right-handed alpha
Helix 4	AA4	A	83	85	Right-handed 310
Helix 5	AA5	A	86	97	Right-handed alpha
Helix 6	AA6	A	110	124	Right-handed alpha
Helix 7	AA7	A	132	136	Right-handed 310
Helix 8	AA8	A	137	150	Right-handed alpha
Helix 9	AA9	A	179	198	Right-handed alpha
Helix 10	AB1	A	288	302	Right-handed alpha
Helix 11	AB2	A	310	331	Right-handed alpha
Helix 12	AB3	B	357	366	Right-handed alpha
Helix 13	AB4	B	382	391	Right-handed alpha
Helix 14	AB5	B	404	416	Right-handed alpha
Helix 15	AB6	B	423	427	Right-handed 310
Helix 16	AB7	B	428	440	Right-handed alpha
Helix 17	AB8	B	459	476	Right-handed alpha
Helix 18	AB9	B	558	569	Right-handed alpha
Helix 19	AC1	B	577	598	Right-handed alpha
Helix 20	AC2	C	27	40	Right-handed alpha
Helix 21	AC3	C	51	59	Right-handed alpha
Helix 22	AC4	C	67	73	Right-handed alpha
Helix 23	AC5	C	83	85	Right-handed 310
Helix 24	AC6	C	86	96	Right-handed alpha
Helix 25	AC7	C	110	124	Right-handed alpha
Helix 26	AC8	C	132	136	Right-handed 310
Helix 27	AC9	C	137	149	Right-handed alpha
Helix 28	AD1	C	179	198	Right-handed alpha
Helix 29	AD2	C	288	302	Right-handed alpha
Helix 30	AD3	C	310	331	Right-handed alpha
Helix 31	AD4	D	357	367	Right-handed alpha
Helix 32	AD5	D	382	391	Right-handed alpha
Helix 33	AD6	D	404	416	Right-handed alpha
Helix 34	AD7	D	423	427	Right-handed 310
Helix 35	AD8	D	428	440	Right-handed alpha
Helix 36	AD9	D	459	465	Right-handed alpha
Helix 37	AE1	D	465	476	Right-handed alpha
Helix 38	AE2	D	558	569	Right-handed alpha
Helix 39	AE3	D	577	598	Right-handed alpha

There are 10 sheets in PDB entry 9VCN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	43	47	parallel
Strand 3	A	20	24	parallel
Strand 4	A	77	80	parallel
Strand 5	A	100	104	parallel
Strand 6	A	128	131	parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	335	first strand
Strand 2	A	200	208	anti-parallel
Strand 3	A	221	229	anti-parallel
Strand 4	A	234	242	anti-parallel
Strand 5	A	155	165	parallel
Strand 6	A	249	257	anti-parallel
Strand 7	A	260	265	anti-parallel
Strand 8	D	545	549	anti-parallel
Strand 9	D	553	554	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	174	first strand
Strand 2	A	213	215	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	276	first strand
Strand 2	D	536	541	anti-parallel
Strand 3	D	528	533	anti-parallel
Strand 4	D	446	455	anti-parallel
Strand 5	D	512	519	parallel
Strand 6	D	500	507	anti-parallel
Strand 7	D	481	489	anti-parallel
Strand 8	D	601	602	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	377	first strand
Strand 2	B	350	354	parallel
Strand 3	B	394	397	parallel
Strand 4	B	419	421	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	601	602	first strand
Strand 2	B	481	489	anti-parallel
Strand 3	B	500	507	anti-parallel
Strand 4	B	512	519	anti-parallel
Strand 5	B	446	455	parallel
Strand 6	B	528	533	anti-parallel
Strand 7	B	536	541	anti-parallel
Strand 8	C	272	276	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	545	549	anti-parallel
Strand 3	C	260	265	anti-parallel
Strand 4	C	249	257	anti-parallel
Strand 5	C	155	165	anti-parallel
Strand 6	C	234	242	parallel
Strand 7	C	221	229	anti-parallel
Strand 8	C	200	209	anti-parallel
Strand 9	C	334	335	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	43	47	parallel
Strand 3	C	20	24	parallel
Strand 4	C	77	80	parallel
Strand 5	C	100	104	parallel
Strand 6	C	128	131	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	174	first strand
Strand 2	C	213	215	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	372	377	first strand
Strand 2	D	350	354	parallel
Strand 3	D	394	397	parallel
Strand 4	D	419	421	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VCN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VCN