Analysis of interatomic Contacts of Structural Units in PDB entry:
9VCT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VCT entry

There is 1 chain in PDB entry 9VCT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 87GLU 689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9VCT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 102Right-handed alpha
Helix 2
AA2
A
103 113Right-handed alpha
Helix 3
AA3
A
116 134Right-handed alpha
Helix 4
AA4
A
138 151Right-handed alpha
Helix 5
AA5
A
157 170Right-handed alpha
Helix 6
AA6
A
171 183Right-handed alpha
Helix 7
AA7
A
187 191Right-handed 310
Helix 8
AA8
A
192 198Right-handed alpha
Helix 9
AA9
A
212 224Right-handed alpha
Helix 10
AB1
A
233 247Right-handed alpha
Helix 11
AB2
A
277 279Right-handed 310
Helix 12
AB3
A
293 298Right-handed 310
Helix 13
AB4
A
301 312Right-handed alpha
Helix 14
AB5
A
322 337Right-handed alpha
Helix 15
AB6
A
374 389Right-handed alpha
Helix 16
AB7
A
400 413Right-handed alpha
Helix 17
AB8
A
424 429Right-handed 310
Helix 18
AB9
A
460 469Right-handed alpha
Helix 19
AC1
A
487 500Right-handed alpha
Helix 20
AC2
A
513 524Right-handed alpha
Helix 21
AC3
A
528 539Right-handed alpha
Helix 22
AC4
A
551 561Right-handed alpha
Helix 23
AC5
A
567 576Right-handed alpha
Helix 24
AC6
A
583 600Right-handed alpha
Helix 25
AC7
A
604 612Right-handed alpha
Helix 26
AC8
A
621 643Right-handed alpha
Helix 27
AC9
A
651 672Right-handed alpha
Helix 28
AD1
A
672 683Right-handed alpha
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There are 4 sheets in PDB entry 9VCT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
227 231parallel
Strand 3
A
287 291parallel
Strand 4
A
316 321parallel
Strand 5
A
201 206parallel
Strand 6
A
340 344parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
481 485parallel
Strand 3
A
437 440parallel
Strand 4
A
368 371parallel
Strand 5
A
420 423parallel
Strand 6
A
392 394parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
454 458anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 510first strand
Strand 2
A
546 548parallel
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