Analysis of interatomic Contacts of Structural Units in PDB entry:
9VCU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VCU entry

There are 2 chains in PDB entry 9VCU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 87LEU 688
B
 GLY 54LEU 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 9VCU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 103Right-handed alpha
Helix 2
AA2
A
104 112Right-handed alpha
Helix 3
AA3
A
116 133Right-handed alpha
Helix 4
AA4
A
138 150Right-handed alpha
Helix 5
AA5
A
154 170Right-handed alpha
Helix 6
AA6
A
170 175Right-handed alpha
Helix 7
AA7
A
175 183Right-handed alpha
Helix 8
AA8
A
187 192Right-handed 310
Helix 9
AA9
A
212 223Right-handed alpha
Helix 10
AB1
A
233 248Right-handed alpha
Helix 11
AB2
A
277 279Right-handed 310
Helix 12
AB3
A
293 296Right-handed 310
Helix 13
AB4
A
301 312Right-handed alpha
Helix 14
AB5
A
322 324Right-handed 310
Helix 15
AB6
A
325 337Right-handed alpha
Helix 16
AB7
A
374 388Right-handed alpha
Helix 17
AB8
A
400 412Right-handed alpha
Helix 18
AB9
A
426 429Right-handed 310
Helix 19
AC1
A
460 470Right-handed alpha
Helix 20
AC2
A
487 499Right-handed alpha
Helix 21
AC3
A
513 524Right-handed alpha
Helix 22
AC4
A
528 539Right-handed alpha
Helix 23
AC5
A
551 563Right-handed alpha
Helix 24
AC6
A
567 577Right-handed alpha
Helix 25
AC7
A
583 600Right-handed alpha
Helix 26
AC8
A
604 613Right-handed alpha
Helix 27
AC9
A
621 645Right-handed alpha
Helix 28
AD1
A
651 671Right-handed alpha
Helix 29
AD2
A
672 684Right-handed alpha
Helix 30
AD3
B
79 85Right-handed alpha
Helix 31
AD4
B
89 103Right-handed alpha
Helix 32
AD5
B
103 114Right-handed alpha
Helix 33
AD6
B
116 133Right-handed alpha
Helix 34
AD7
B
138 150Right-handed alpha
Helix 35
AD8
B
154 170Right-handed alpha
Helix 36
AD9
B
175 183Right-handed alpha
Helix 37
AE1
B
187 191Right-handed 310
Helix 38
AE2
B
192 198Right-handed alpha
Helix 39
AE3
B
212 223Right-handed alpha
Helix 40
AE4
B
233 247Right-handed alpha
Helix 41
AE5
B
293 298Right-handed 310
Helix 42
AE6
B
301 310Right-handed alpha
Helix 43
AE7
B
322 324Right-handed 310
Helix 44
AE8
B
325 337Right-handed alpha
Helix 45
AE9
B
360 364Right-handed 310
Helix 46
AF1
B
374 389Right-handed alpha
Helix 47
AF2
B
400 413Right-handed alpha
Helix 48
AF3
B
460 470Right-handed alpha
Helix 49
AF4
B
475 479Right-handed 310
Helix 50
AF5
B
488 500Right-handed alpha
Helix 51
AF6
B
513 524Right-handed alpha
Helix 52
AF7
B
529 540Right-handed alpha
Helix 53
AF8
B
552 561Right-handed alpha
Helix 54
AF9
B
567 576Right-handed alpha
Helix 55
AG1
B
583 599Right-handed alpha
Helix 56
AG2
B
604 613Right-handed alpha
Helix 57
AG3
B
622 643Right-handed alpha
Helix 58
AG4
B
651 671Right-handed alpha
Helix 59
AG5
B
672 688Right-handed alpha
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There are 7 sheets in PDB entry 9VCU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
251 254anti-parallel
Strand 3
A
271 275parallel
Strand 4
A
227 231parallel
Strand 5
A
285 291parallel
Strand 6
A
314 321parallel
Strand 7
A
201 206parallel
Strand 8
A
342 344parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 395first strand
Strand 2
A
418 424parallel
Strand 3
A
368 372parallel
Strand 4
A
437 440parallel
Strand 5
A
482 484parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
457 458anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
509 510first strand
Strand 2
A
547 548parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
271 272parallel
Strand 3
B
227 230parallel
Strand 4
B
287 291parallel
Strand 5
B
316 321parallel
Strand 6
B
201 206parallel
Strand 7
B
340 344parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 353first strand
Strand 2
B
481 485parallel
Strand 3
B
437 440parallel
Strand 4
B
368 371parallel
Strand 5
B
421 423parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 448first strand
Strand 2
B
454 458anti-parallel
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