Analysis of interatomic Contacts of Structural Units in PDB entry:
9VCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VCV entry

There are 2 chains in PDB entry 9VCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 87ASN 687
C
 U 1 U 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9VCV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 103Right-handed alpha
Helix 2
AA2
A
103 113Right-handed alpha
Helix 3
AA3
A
116 134Right-handed alpha
Helix 4
AA4
A
138 150Right-handed alpha
Helix 5
AA5
A
154 157Right-handed 310
Helix 6
AA6
A
158 170Right-handed alpha
Helix 7
AA7
A
171 183Right-handed alpha
Helix 8
AA8
A
187 191Right-handed 310
Helix 9
AA9
A
192 198Right-handed alpha
Helix 10
AB1
A
212 224Right-handed alpha
Helix 11
AB2
A
233 247Right-handed alpha
Helix 12
AB3
A
292 298Right-handed 310
Helix 13
AB4
A
301 312Right-handed alpha
Helix 14
AB5
A
322 324Right-handed 310
Helix 15
AB6
A
325 337Right-handed alpha
Helix 16
AB7
A
374 389Right-handed alpha
Helix 17
AB8
A
400 412Right-handed alpha
Helix 18
AB9
A
426 429Right-handed 310
Helix 19
AC1
A
460 470Right-handed alpha
Helix 20
AC2
A
487 498Right-handed alpha
Helix 21
AC3
A
513 524Right-handed alpha
Helix 22
AC4
A
528 539Right-handed alpha
Helix 23
AC5
A
551 561Right-handed alpha
Helix 24
AC6
A
567 576Right-handed alpha
Helix 25
AC7
A
583 600Right-handed alpha
Helix 26
AC8
A
604 612Right-handed alpha
Helix 27
AC9
A
621 643Right-handed alpha
Helix 28
AD1
A
652 672Right-handed alpha
Helix 29
AD2
A
672 683Right-handed alpha
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There are 3 sheets in PDB entry 9VCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
228 231parallel
Strand 3
A
285 290parallel
Strand 4
A
314 321parallel
Strand 5
A
201 206parallel
Strand 6
A
341 344parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
482 485parallel
Strand 3
A
437 440parallel
Strand 4
A
369 372parallel
Strand 5
A
421 424parallel
Strand 6
A
393 395parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 447first strand
Strand 2
A
455 458anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il