Analysis of interatomic Contacts of Structural Units in PDB entry:
9VD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VD0 entry

There are 2 chains in PDB entry 9VD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 U 1 U 2
A
 PRO 87GLU 689
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 9VD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 103Right-handed alpha
Helix 2
AA2
A
103 113Right-handed alpha
Helix 3
AA3
A
116 134Right-handed alpha
Helix 4
AA4
A
138 150Right-handed alpha
Helix 5
AA5
A
154 157Right-handed 310
Helix 6
AA6
A
158 170Right-handed alpha
Helix 7
AA7
A
171 183Right-handed alpha
Helix 8
AA8
A
187 191Right-handed 310
Helix 9
AA9
A
192 198Right-handed alpha
Helix 10
AB1
A
212 224Right-handed alpha
Helix 11
AB2
A
233 247Right-handed alpha
Helix 12
AB3
A
277 279Right-handed 310
Helix 13
AB4
A
292 298Right-handed 310
Helix 14
AB5
A
301 312Right-handed alpha
Helix 15
AB6
A
322 324Right-handed 310
Helix 16
AB7
A
325 336Right-handed alpha
Helix 17
AB8
A
360 364Right-handed 310
Helix 18
AB9
A
374 388Right-handed alpha
Helix 19
AC1
A
400 412Right-handed alpha
Helix 20
AC2
A
425 429Right-handed 310
Helix 21
AC3
A
460 470Right-handed alpha
Helix 22
AC4
A
487 500Right-handed alpha
Helix 23
AC5
A
513 524Right-handed alpha
Helix 24
AC6
A
528 539Right-handed alpha
Helix 25
AC7
A
551 561Right-handed alpha
Helix 26
AC8
A
567 577Right-handed alpha
Helix 27
AC9
A
583 599Right-handed alpha
Helix 28
AD1
A
604 612Right-handed alpha
Helix 29
AD2
A
621 643Right-handed alpha
Helix 30
AD3
A
652 672Right-handed alpha
Helix 31
AD4
A
672 685Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9VD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 260first strand
Strand 2
A
251 254anti-parallel
Strand 3
A
271 275parallel
Strand 4
A
227 231parallel
Strand 5
A
285 290parallel
Strand 6
A
314 320parallel
Strand 7
A
201 205parallel
Strand 8
A
340 343parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
482 485parallel
Strand 3
A
437 440parallel
Strand 4
A
368 371parallel
Strand 5
A
420 423parallel
Strand 6
A
392 395parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
454 458anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il