Analysis of interatomic Contacts of Structural Units in PDB entry:
9VD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VD1 entry

There are 3 chains in PDB entry 9VD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 U 1 U 2
B
 GLY 54LEU 688
A
 PRO 87LEU 688
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 9VD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
79 85Right-handed alpha
Helix 2
AA2
B
89 102Right-handed alpha
Helix 3
AA3
B
103 113Right-handed alpha
Helix 4
AA4
B
116 133Right-handed alpha
Helix 5
AA5
B
138 151Right-handed alpha
Helix 6
AA6
B
158 170Right-handed alpha
Helix 7
AA7
B
175 183Right-handed alpha
Helix 8
AA8
B
187 191Right-handed 310
Helix 9
AA9
B
193 198Right-handed alpha
Helix 10
AB1
B
213 224Right-handed alpha
Helix 11
AB2
B
233 248Right-handed alpha
Helix 12
AB3
B
292 298Right-handed 310
Helix 13
AB4
B
301 310Right-handed alpha
Helix 14
AB5
B
322 337Right-handed alpha
Helix 15
AB6
B
360 364Right-handed 310
Helix 16
AB7
B
374 389Right-handed alpha
Helix 17
AB8
B
400 412Right-handed alpha
Helix 18
AB9
B
426 428Right-handed 310
Helix 19
AC1
B
460 472Right-handed alpha
Helix 20
AC2
B
473 477Right-handed 310
Helix 21
AC3
B
488 500Right-handed alpha
Helix 22
AC4
B
513 524Right-handed alpha
Helix 23
AC5
B
529 539Right-handed alpha
Helix 24
AC6
B
551 562Right-handed alpha
Helix 25
AC7
B
568 577Right-handed alpha
Helix 26
AC8
B
583 599Right-handed alpha
Helix 27
AC9
B
604 612Right-handed alpha
Helix 28
AD1
B
622 643Right-handed alpha
Helix 29
AD2
B
651 672Right-handed alpha
Helix 30
AD3
B
672 687Right-handed alpha
Helix 31
AD4
A
89 103Right-handed alpha
Helix 32
AD5
A
103 112Right-handed alpha
Helix 33
AD6
A
116 133Right-handed alpha
Helix 34
AD7
A
138 151Right-handed alpha
Helix 35
AD8
A
154 170Right-handed alpha
Helix 36
AD9
A
175 183Right-handed alpha
Helix 37
AE1
A
187 192Right-handed 310
Helix 38
AE2
A
194 198Right-handed 310
Helix 39
AE3
A
212 223Right-handed alpha
Helix 40
AE4
A
233 248Right-handed alpha
Helix 41
AE5
A
276 279Right-handed 310
Helix 42
AE6
A
292 296Right-handed 310
Helix 43
AE7
A
301 312Right-handed alpha
Helix 44
AE8
A
322 324Right-handed 310
Helix 45
AE9
A
325 337Right-handed alpha
Helix 46
AF1
A
360 364Right-handed 310
Helix 47
AF2
A
374 389Right-handed alpha
Helix 48
AF3
A
400 413Right-handed alpha
Helix 49
AF4
A
425 430Right-handed 310
Helix 50
AF5
A
460 470Right-handed alpha
Helix 51
AF6
A
488 499Right-handed alpha
Helix 52
AF7
A
513 524Right-handed alpha
Helix 53
AF8
A
528 539Right-handed alpha
Helix 54
AF9
A
551 562Right-handed alpha
Helix 55
AG1
A
567 577Right-handed alpha
Helix 56
AG2
A
584 600Right-handed alpha
Helix 57
AG3
A
604 613Right-handed alpha
Helix 58
AG4
A
621 645Right-handed alpha
Helix 59
AG5
A
651 671Right-handed alpha
Helix 60
AG6
A
672 684Right-handed alpha
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There are 6 sheets in PDB entry 9VD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
251 252first strand
Strand 2
B
271 275parallel
Strand 3
B
227 231parallel
Strand 4
B
285 290parallel
Strand 5
B
314 320parallel
Strand 6
B
201 205parallel
Strand 7
B
340 343parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
392 393first strand
Strand 2
B
420 424parallel
Strand 3
B
368 372parallel
Strand 4
B
437 440parallel
Strand 5
B
482 485parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 254first strand
Strand 2
A
271 274parallel
Strand 3
A
227 228parallel
Strand 4
A
287 290parallel
Strand 5
A
316 320parallel
Strand 6
A
201 205parallel
Strand 7
A
342 343parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 353first strand
Strand 2
A
481 485parallel
Strand 3
A
437 440parallel
Strand 4
A
368 371parallel
Strand 5
A
418 423parallel
Strand 6
A
391 395parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
457 458anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 510first strand
Strand 2
A
546 548parallel
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