Analysis of interatomic Contacts of Structural Units in PDB entry:
9VD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VD8 entry

There is 1 chain in PDB entry 9VD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ARG 590
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9VD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 107Right-handed 310
Helix 2
AA2
A
119 123Right-handed 310
Helix 3
AA3
A
129 133Right-handed 310
Helix 4
AA4
A
163 178Right-handed alpha
Helix 5
AA5
A
206 208Right-handed 310
Helix 6
AA6
A
209 224Right-handed alpha
Helix 7
AA7
A
262 266Right-handed 310
Helix 8
AA8
A
290 298Right-handed alpha
Helix 9
AA9
A
303 308Right-handed alpha
Helix 10
AB1
A
334 350Right-handed alpha
Helix 11
AB2
A
363 369Right-handed alpha
Helix 12
AB3
A
381 391Right-handed alpha
Helix 13
AB4
A
402 416Right-handed alpha
Helix 14
AB5
A
418 424Right-handed alpha
Helix 15
AB6
A
436 441Right-handed alpha
Helix 16
AB7
A
442 446Right-handed 310
Helix 17
AB8
A
447 458Right-handed alpha
Helix 18
AB9
A
467 471Right-handed 310
Helix 19
AC1
A
487 491Right-handed 310
Helix 20
AC2
A
492 509Right-handed alpha
Helix 21
AC3
A
510 515Right-handed alpha
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There are 9 sheets in PDB entry 9VD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
13 16anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 5first strand
Strand 2
A
19 27anti-parallel
Strand 3
A
62 69anti-parallel
Strand 4
A
51 52anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
89 93anti-parallel
Strand 5
A
96 98anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
34 41anti-parallel
Strand 3
A
76 84anti-parallel
Strand 4
A
108 111anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
354 357parallel
Strand 3
A
317 320parallel
Strand 4
A
227 232parallel
Strand 5
A
181 184parallel
Strand 6
A
125 128parallel
Strand 7
A
461 465parallel
Strand 8
A
426 427parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
200 204anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 277first strand
Strand 2
A
280 284anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
516 523first strand
Strand 2
A
526 533anti-parallel
Strand 3
A
536 543anti-parallel
Strand 4
A
583 590anti-parallel
Strand 5
A
562 567anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
548 551first strand
Strand 2
A
576 579anti-parallel
Strand 3
A
571 573anti-parallel
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