Analysis of interatomic Contacts of Structural Units in PDB entry:
9VDB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VDB entry

There are 2 chains in PDB entry 9VDB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6GLY 432
B
 ASP 9LEU 179
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9VDB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 11Right-handed 310
Helix 2
AA2
A
23 26Right-handed 310
Helix 3
AA3
A
27 38Right-handed alpha
Helix 4
AA4
A
39 42Right-handed 310
Helix 5
AA5
A
50 52Right-handed 310
Helix 6
AA6
A
123 127Right-handed 310
Helix 7
AA7
A
130 134Right-handed 310
Helix 8
AA8
A
159 165Right-handed alpha
Helix 9
AA9
A
166 176Right-handed alpha
Helix 10
AB1
A
196 206Right-handed alpha
Helix 11
AB2
A
209 214Right-handed alpha
Helix 12
AB3
A
214 222Right-handed alpha
Helix 13
AB4
A
261 270Right-handed alpha
Helix 14
AB5
A
275 282Right-handed alpha
Helix 15
AB6
A
282 293Right-handed alpha
Helix 16
AB7
A
293 299Right-handed alpha
Helix 17
AB8
A
344 359Right-handed alpha
Helix 18
AB9
A
365 380Right-handed alpha
Helix 19
AC1
A
385 388Right-handed 310
Helix 20
AC2
A
416 432Right-handed alpha
Helix 21
AC3
B
10 31Right-handed alpha
Helix 22
AC4
B
33 39Right-handed alpha
Helix 23
AC5
B
56 63Right-handed 310
Helix 24
AC6
B
66 69Right-handed 310
Helix 25
AC7
B
76 88Right-handed alpha
Helix 26
AC8
B
92 96Right-handed 310
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There are 6 sheets in PDB entry 9VDB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
19 21anti-parallel
Strand 3
A
390 392anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 48first strand
Strand 2
A
148 152anti-parallel
Strand 3
A
141 145anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 82first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
57 63anti-parallel
Strand 4
A
97 99anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
111 113anti-parallel
Strand 3
A
118 120anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 192first strand
Strand 2
A
331 340anti-parallel
Strand 3
A
319 325anti-parallel
Strand 4
A
311 314anti-parallel
Strand 5
A
301 307anti-parallel
Strand 6
A
252 257anti-parallel
Strand 7
A
241 245anti-parallel
Strand 8
A
409 412anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 75first strand
Strand 2
B
41 50anti-parallel
Strand 3
B
156 165parallel
Strand 4
B
134 149anti-parallel
Strand 5
B
118 131anti-parallel
Strand 6
B
100 112anti-parallel
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