Analysis of interatomic Contacts of Structural Units in PDB entry:
9VDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VDC entry

There are 2 chains in PDB entry 9VDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 543
B
 MET 1SER 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9VDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 11Right-handed alpha
Helix 2
AA2
A
11 19Right-handed alpha
Helix 3
AA3
A
20 29Right-handed alpha
Helix 4
AA4
A
37 50Right-handed alpha
Helix 5
AA5
A
51 53Right-handed 310
Helix 6
AA6
A
58 88Right-handed alpha
Helix 7
AA7
A
90 115Right-handed alpha
Helix 8
AA8
A
117 129Right-handed alpha
Helix 9
AA9
A
133 145Right-handed alpha
Helix 10
AB1
A
148 180Right-handed alpha
Helix 11
AB2
A
180 187Right-handed alpha
Helix 12
AB3
A
189 201Right-handed alpha
Helix 13
AB4
A
228 236Right-handed alpha
Helix 14
AB5
A
267 276Right-handed alpha
Helix 15
AB6
A
302 312Right-handed alpha
Helix 16
AB7
A
324 330Right-handed alpha
Helix 17
AB8
A
344 353Right-handed alpha
Helix 18
AB9
A
364 381Right-handed alpha
Helix 19
AC1
A
394 408Right-handed alpha
Helix 20
AC2
A
422 442Right-handed alpha
Helix 21
AC3
A
445 453Right-handed alpha
Helix 22
AC4
A
454 478Right-handed alpha
Helix 23
AC5
A
483 490Right-handed alpha
Helix 24
AC6
A
497 509Right-handed alpha
Helix 25
AC7
A
512 543Right-handed alpha
Helix 26
AC8
B
2 11Right-handed alpha
Helix 27
AC9
B
11 19Right-handed alpha
Helix 28
AD1
B
20 29Right-handed alpha
Helix 29
AD2
B
37 50Right-handed alpha
Helix 30
AD3
B
51 53Right-handed 310
Helix 31
AD4
B
58 88Right-handed alpha
Helix 32
AD5
B
90 115Right-handed alpha
Helix 33
AD6
B
117 129Right-handed alpha
Helix 34
AD7
B
133 145Right-handed alpha
Helix 35
AD8
B
148 180Right-handed alpha
Helix 36
AD9
B
180 187Right-handed alpha
Helix 37
AE1
B
189 201Right-handed alpha
Helix 38
AE2
B
228 236Right-handed alpha
Helix 39
AE3
B
267 276Right-handed alpha
Helix 40
AE4
B
302 312Right-handed alpha
Helix 41
AE5
B
324 330Right-handed alpha
Helix 42
AE6
B
344 353Right-handed alpha
Helix 43
AE7
B
364 381Right-handed alpha
Helix 44
AE8
B
394 408Right-handed alpha
Helix 45
AE9
B
422 442Right-handed alpha
Helix 46
AF1
B
445 453Right-handed alpha
Helix 47
AF2
B
454 478Right-handed alpha
Helix 48
AF3
B
483 490Right-handed alpha
Helix 49
AF4
B
497 509Right-handed alpha
Helix 50
AF5
B
512 543Right-handed alpha
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There are 8 sheets in PDB entry 9VDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
263 265anti-parallel
Strand 3
A
240 241anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
280 281anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
337 339anti-parallel
Strand 3
A
315 316anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 385first strand
Strand 2
A
388 391anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 214first strand
Strand 2
B
263 265anti-parallel
Strand 3
B
240 241anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
280 281anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 295first strand
Strand 2
B
336 339anti-parallel
Strand 3
B
315 316anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 385first strand
Strand 2
B
388 391anti-parallel
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