Analysis of interatomic Contacts of Structural Units in PDB entry:
9VDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VDK entry

There are 2 chains in PDB entry 9VDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 33THR 390
A
 LYS 392LYS 1044
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9VDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
67 78Right-handed alpha
Helix 2
AA2
A
79 91Right-handed alpha
Helix 3
AA3
A
92 98Right-handed 310
Helix 4
AA4
A
102 136Right-handed alpha
Helix 5
AA5
A
153 155Right-handed 310
Helix 6
AA6
A
189 194Right-handed alpha
Helix 7
AA7
A
204 209Right-handed alpha
Helix 8
AA8
A
212 217Right-handed 310
Helix 9
AA9
A
253 255Right-handed 310
Helix 10
AB1
A
276 279Right-handed 310
Helix 11
AB2
A
280 285Right-handed alpha
Helix 12
AB3
A
294 322Right-handed alpha
Helix 13
AB4
A
327 339Right-handed alpha
Helix 14
AB5
A
340 343Right-handed 310
Helix 15
AB6
A
344 364Right-handed alpha
Helix 16
AB7
A
378 383Right-handed 310
Helix 17
AB8
A
414 416Right-handed 310
Helix 18
AB9
A
417 432Right-handed alpha
Helix 19
AC1
A
451 466Right-handed alpha
Helix 20
AC2
A
480 488Right-handed alpha
Helix 21
AC3
A
499 513Right-handed alpha
Helix 22
AC4
A
570 578Right-handed alpha
Helix 23
AC5
A
583 594Right-handed alpha
Helix 24
AC6
A
607 624Right-handed alpha
Helix 25
AC7
A
627 640Right-handed alpha
Helix 26
AC8
A
658 669Right-handed alpha
Helix 27
AC9
A
680 691Right-handed alpha
Helix 28
AD1
A
708 721Right-handed alpha
Helix 29
AD2
A
731 741Right-handed alpha
Helix 30
AD3
A
741 751Right-handed alpha
Helix 31
AD4
A
761 777Right-handed alpha
Helix 32
AD5
A
786 788Right-handed 310
Helix 33
AD6
A
789 796Right-handed alpha
Helix 34
AD7
A
808 814Right-handed alpha
Helix 35
AD8
A
822 830Right-handed alpha
Helix 36
AD9
A
830 864Right-handed alpha
Helix 37
AE1
A
868 880Right-handed alpha
Helix 38
AE2
A
881 884Right-handed 310
Helix 39
AE3
A
885 891Right-handed alpha
Helix 40
AE4
A
892 895Right-handed 310
Helix 41
AE5
A
899 906Right-handed alpha
Helix 42
AE6
A
908 915Right-handed alpha
Helix 43
AE7
A
920 946Right-handed alpha
Helix 44
AE8
A
949 973Right-handed alpha
Helix 45
AE9
A
977 1002Right-handed alpha
Helix 46
AF1
A
1009 1038Right-handed alpha
Helix 47
AF2
A
1040 1044Right-handed 310
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There are 6 sheets in PDB entry 9VDK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
A
248 252anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 151first strand
Strand 2
A
138 142anti-parallel
Strand 3
A
160 163anti-parallel
Strand 4
A
269 275anti-parallel
Strand 5
A
172 178anti-parallel
Strand 6
A
257 258anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
185 188anti-parallel
Strand 3
A
263 264anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
816 818anti-parallel
Strand 3
A
798 802parallel
Strand 4
A
779 784parallel
Strand 5
A
385 391parallel
Strand 6
A
672 676parallel
Strand 7
A
755 758parallel
Strand 8
A
726 730parallel
Strand 9
A
700 702parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 413first strand
Strand 2
A
397 407anti-parallel
Strand 3
A
644 655anti-parallel
Strand 4
A
597 606anti-parallel
Strand 5
A
563 569anti-parallel
Strand 6
A
550 557anti-parallel
Strand 7
A
533 545anti-parallel
Strand 8
A
523 527anti-parallel
Strand 9
A
515 519anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
493 496anti-parallel
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