Analysis of interatomic Contacts of Structural Units in PDB entry:
9VDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VDV entry

There are 6 chains in PDB entry 9VDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 5	GLU 506
B	ASP 5	GLU 506
C	ASP 5	GLU 506
D	ASP 5	GLU 506
E	ASP 5	GLU 506
F	ASP 5	GLU 506

There are168 helices in PDB entry 9VDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	16	Right-handed alpha
Helix 2	AA2	A	40	50	Right-handed alpha
Helix 3	AA3	A	81	95	Right-handed alpha
Helix 4	AA4	A	95	100	Right-handed alpha
Helix 5	AA5	A	101	103	Right-handed 310
Helix 6	AA6	A	127	139	Right-handed alpha
Helix 7	AA7	A	158	160	Right-handed 310
Helix 8	AA8	A	161	168	Right-handed alpha
Helix 9	AA9	A	168	176	Right-handed alpha
Helix 10	AB1	A	186	199	Right-handed alpha
Helix 11	AB2	A	210	231	Right-handed alpha
Helix 12	AB3	A	248	266	Right-handed alpha
Helix 13	AB4	A	286	295	Right-handed alpha
Helix 14	AB5	A	304	309	Right-handed alpha
Helix 15	AB6	A	311	329	Right-handed alpha
Helix 16	AB7	A	333	343	Right-handed alpha
Helix 17	AB8	A	344	346	Right-handed 310
Helix 18	AB9	A	349	365	Right-handed alpha
Helix 19	AC1	A	366	370	Right-handed 310
Helix 20	AC2	A	371	376	Right-handed alpha
Helix 21	AC3	A	385	402	Right-handed alpha
Helix 22	AC4	A	403	417	Right-handed alpha
Helix 23	AC5	A	422	433	Right-handed alpha
Helix 24	AC6	A	434	445	Right-handed alpha
Helix 25	AC7	A	447	462	Right-handed alpha
Helix 26	AC8	A	463	470	Right-handed alpha
Helix 27	AC9	A	470	480	Right-handed alpha
Helix 28	AD1	A	490	498	Right-handed alpha
Helix 29	AD2	B	6	16	Right-handed alpha
Helix 30	AD3	B	40	50	Right-handed alpha
Helix 31	AD4	B	81	95	Right-handed alpha
Helix 32	AD5	B	95	100	Right-handed alpha
Helix 33	AD6	B	101	103	Right-handed 310
Helix 34	AD7	B	127	139	Right-handed alpha
Helix 35	AD8	B	158	160	Right-handed 310
Helix 36	AD9	B	161	168	Right-handed alpha
Helix 37	AE1	B	168	176	Right-handed alpha
Helix 38	AE2	B	186	199	Right-handed alpha
Helix 39	AE3	B	210	231	Right-handed alpha
Helix 40	AE4	B	248	266	Right-handed alpha
Helix 41	AE5	B	286	295	Right-handed alpha
Helix 42	AE6	B	304	309	Right-handed alpha
Helix 43	AE7	B	311	329	Right-handed alpha
Helix 44	AE8	B	333	343	Right-handed alpha
Helix 45	AE9	B	344	346	Right-handed 310
Helix 46	AF1	B	349	365	Right-handed alpha
Helix 47	AF2	B	366	370	Right-handed 310
Helix 48	AF3	B	371	376	Right-handed alpha
Helix 49	AF4	B	385	402	Right-handed alpha
Helix 50	AF5	B	403	417	Right-handed alpha
Helix 51	AF6	B	422	433	Right-handed alpha
Helix 52	AF7	B	434	445	Right-handed alpha
Helix 53	AF8	B	447	462	Right-handed alpha
Helix 54	AF9	B	463	470	Right-handed alpha
Helix 55	AG1	B	470	480	Right-handed alpha
Helix 56	AG2	B	490	498	Right-handed alpha
Helix 57	AG3	C	6	16	Right-handed alpha
Helix 58	AG4	C	40	50	Right-handed alpha
Helix 59	AG5	C	81	95	Right-handed alpha
Helix 60	AG6	C	95	100	Right-handed alpha
Helix 61	AG7	C	101	103	Right-handed 310
Helix 62	AG8	C	127	139	Right-handed alpha
Helix 63	AG9	C	158	160	Right-handed 310
Helix 64	AH1	C	161	168	Right-handed alpha
Helix 65	AH2	C	168	176	Right-handed alpha
Helix 66	AH3	C	186	199	Right-handed alpha
Helix 67	AH4	C	210	231	Right-handed alpha
Helix 68	AH5	C	248	266	Right-handed alpha
Helix 69	AH6	C	286	295	Right-handed alpha
Helix 70	AH7	C	304	309	Right-handed alpha
Helix 71	AH8	C	311	329	Right-handed alpha
Helix 72	AH9	C	333	343	Right-handed alpha
Helix 73	AI1	C	344	346	Right-handed 310
Helix 74	AI2	C	349	365	Right-handed alpha
Helix 75	AI3	C	366	370	Right-handed 310
Helix 76	AI4	C	371	376	Right-handed alpha
Helix 77	AI5	C	385	402	Right-handed alpha
Helix 78	AI6	C	403	417	Right-handed alpha
Helix 79	AI7	C	422	433	Right-handed alpha
Helix 80	AI8	C	434	445	Right-handed alpha
Helix 81	AI9	C	447	462	Right-handed alpha
Helix 82	AJ1	C	463	470	Right-handed alpha
Helix 83	AJ2	C	470	480	Right-handed alpha
Helix 84	AJ3	C	490	498	Right-handed alpha
Helix 85	AJ4	D	6	16	Right-handed alpha
Helix 86	AJ5	D	40	50	Right-handed alpha
Helix 87	AJ6	D	81	95	Right-handed alpha
Helix 88	AJ7	D	95	100	Right-handed alpha
Helix 89	AJ8	D	101	103	Right-handed 310
Helix 90	AJ9	D	127	139	Right-handed alpha
Helix 91	AK1	D	158	160	Right-handed 310
Helix 92	AK2	D	161	168	Right-handed alpha
Helix 93	AK3	D	168	176	Right-handed alpha
Helix 94	AK4	D	186	199	Right-handed alpha
Helix 95	AK5	D	210	231	Right-handed alpha
Helix 96	AK6	D	248	266	Right-handed alpha
Helix 97	AK7	D	286	295	Right-handed alpha
Helix 98	AK8	D	304	309	Right-handed alpha
Helix 99	AK9	D	311	329	Right-handed alpha
Helix 100	AL1	D	333	343	Right-handed alpha
Helix 101	AL2	D	344	346	Right-handed 310
Helix 102	AL3	D	349	365	Right-handed alpha
Helix 103	AL4	D	366	370	Right-handed 310
Helix 104	AL5	D	371	376	Right-handed alpha
Helix 105	AL6	D	385	402	Right-handed alpha
Helix 106	AL7	D	403	417	Right-handed alpha
Helix 107	AL8	D	422	433	Right-handed alpha
Helix 108	AL9	D	434	445	Right-handed alpha
Helix 109	AM1	D	447	462	Right-handed alpha
Helix 110	AM2	D	463	470	Right-handed alpha
Helix 111	AM3	D	470	480	Right-handed alpha
Helix 112	AM4	D	490	498	Right-handed alpha
Helix 113	AM5	E	6	16	Right-handed alpha
Helix 114	AM6	E	40	50	Right-handed alpha
Helix 115	AM7	E	81	95	Right-handed alpha
Helix 116	AM8	E	95	100	Right-handed alpha
Helix 117	AM9	E	101	103	Right-handed 310
Helix 118	AN1	E	127	139	Right-handed alpha
Helix 119	AN2	E	158	160	Right-handed 310
Helix 120	AN3	E	161	168	Right-handed alpha
Helix 121	AN4	E	168	176	Right-handed alpha
Helix 122	AN5	E	186	199	Right-handed alpha
Helix 123	AN6	E	210	231	Right-handed alpha
Helix 124	AN7	E	248	266	Right-handed alpha
Helix 125	AN8	E	286	295	Right-handed alpha
Helix 126	AN9	E	304	309	Right-handed alpha
Helix 127	AO1	E	311	329	Right-handed alpha
Helix 128	AO2	E	333	343	Right-handed alpha
Helix 129	AO3	E	344	346	Right-handed 310
Helix 130	AO4	E	349	365	Right-handed alpha
Helix 131	AO5	E	366	370	Right-handed 310
Helix 132	AO6	E	371	376	Right-handed alpha
Helix 133	AO7	E	385	402	Right-handed alpha
Helix 134	AO8	E	403	417	Right-handed alpha
Helix 135	AO9	E	422	433	Right-handed alpha
Helix 136	AP1	E	434	445	Right-handed alpha
Helix 137	AP2	E	447	462	Right-handed alpha
Helix 138	AP3	E	463	470	Right-handed alpha
Helix 139	AP4	E	470	480	Right-handed alpha
Helix 140	AP5	E	490	498	Right-handed alpha
Helix 141	AP6	F	6	16	Right-handed alpha
Helix 142	AP7	F	40	50	Right-handed alpha
Helix 143	AP8	F	81	95	Right-handed alpha
Helix 144	AP9	F	95	100	Right-handed alpha
Helix 145	AQ1	F	101	103	Right-handed 310
Helix 146	AQ2	F	127	139	Right-handed alpha
Helix 147	AQ3	F	158	160	Right-handed 310
Helix 148	AQ4	F	161	168	Right-handed alpha
Helix 149	AQ5	F	168	176	Right-handed alpha
Helix 150	AQ6	F	186	199	Right-handed alpha
Helix 151	AQ7	F	210	231	Right-handed alpha
Helix 152	AQ8	F	248	266	Right-handed alpha
Helix 153	AQ9	F	286	295	Right-handed alpha
Helix 154	AR1	F	304	309	Right-handed alpha
Helix 155	AR2	F	311	329	Right-handed alpha
Helix 156	AR3	F	333	343	Right-handed alpha
Helix 157	AR4	F	344	346	Right-handed 310
Helix 158	AR5	F	349	365	Right-handed alpha
Helix 159	AR6	F	366	370	Right-handed 310
Helix 160	AR7	F	371	376	Right-handed alpha
Helix 161	AR8	F	385	402	Right-handed alpha
Helix 162	AR9	F	403	417	Right-handed alpha
Helix 163	AS1	F	422	433	Right-handed alpha
Helix 164	AS2	F	434	445	Right-handed alpha
Helix 165	AS3	F	447	462	Right-handed alpha
Helix 166	AS4	F	463	470	Right-handed alpha
Helix 167	AS5	F	470	480	Right-handed alpha
Helix 168	AS6	F	490	498	Right-handed alpha

There are 12 sheets in PDB entry 9VDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	68	first strand
Strand 2	A	74	80	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	238	first strand
Strand 2	A	241	246	anti-parallel
Strand 3	A	144	150	anti-parallel
Strand 4	A	270	279	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	68	first strand
Strand 2	B	74	80	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	B	241	246	anti-parallel
Strand 3	B	144	150	anti-parallel
Strand 4	B	270	279	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	68	first strand
Strand 2	C	74	80	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	238	first strand
Strand 2	C	241	246	anti-parallel
Strand 3	C	144	150	anti-parallel
Strand 4	C	270	279	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	68	first strand
Strand 2	D	74	80	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	238	first strand
Strand 2	D	241	246	anti-parallel
Strand 3	D	144	150	anti-parallel
Strand 4	D	270	279	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	68	first strand
Strand 2	E	74	80	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	234	238	first strand
Strand 2	E	241	246	anti-parallel
Strand 3	E	144	150	anti-parallel
Strand 4	E	270	279	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	62	68	first strand
Strand 2	F	74	80	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	234	238	first strand
Strand 2	F	241	246	anti-parallel
Strand 3	F	144	150	anti-parallel
Strand 4	F	270	279	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VDV