Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VEB entry

There are 2 chains in PDB entry 9VEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 543
B
 MET 1SER 543
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 9VEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 11Right-handed alpha
Helix 2
AA2
A
11 19Right-handed alpha
Helix 3
AA3
A
21 28Right-handed alpha
Helix 4
AA4
A
37 51Right-handed alpha
Helix 5
AA5
A
61 77Right-handed alpha
Helix 6
AA6
A
80 88Right-handed alpha
Helix 7
AA7
A
89 114Right-handed alpha
Helix 8
AA8
A
117 129Right-handed alpha
Helix 9
AA9
A
132 145Right-handed alpha
Helix 10
AB1
A
148 168Right-handed alpha
Helix 11
AB2
A
168 180Right-handed alpha
Helix 12
AB3
A
180 186Right-handed alpha
Helix 13
AB4
A
189 201Right-handed alpha
Helix 14
AB5
A
228 236Right-handed alpha
Helix 15
AB6
A
266 278Right-handed alpha
Helix 16
AB7
A
301 312Right-handed alpha
Helix 17
AB8
A
326 331Right-handed alpha
Helix 18
AB9
A
343 353Right-handed alpha
Helix 19
AC1
A
364 381Right-handed alpha
Helix 20
AC2
A
392 412Right-handed alpha
Helix 21
AC3
A
419 442Right-handed alpha
Helix 22
AC4
A
443 452Right-handed alpha
Helix 23
AC5
A
455 479Right-handed alpha
Helix 24
AC6
A
483 496Right-handed alpha
Helix 25
AC7
A
497 509Right-handed alpha
Helix 26
AC8
A
512 543Right-handed alpha
Helix 27
AC9
B
2 11Right-handed alpha
Helix 28
AD1
B
11 19Right-handed alpha
Helix 29
AD2
B
21 28Right-handed alpha
Helix 30
AD3
B
37 51Right-handed alpha
Helix 31
AD4
B
61 77Right-handed alpha
Helix 32
AD5
B
80 88Right-handed alpha
Helix 33
AD6
B
89 114Right-handed alpha
Helix 34
AD7
B
117 129Right-handed alpha
Helix 35
AD8
B
132 145Right-handed alpha
Helix 36
AD9
B
148 168Right-handed alpha
Helix 37
AE1
B
168 180Right-handed alpha
Helix 38
AE2
B
180 186Right-handed alpha
Helix 39
AE3
B
189 201Right-handed alpha
Helix 40
AE4
B
228 236Right-handed alpha
Helix 41
AE5
B
266 278Right-handed alpha
Helix 42
AE6
B
301 312Right-handed alpha
Helix 43
AE7
B
326 331Right-handed alpha
Helix 44
AE8
B
343 353Right-handed alpha
Helix 45
AE9
B
364 381Right-handed alpha
Helix 46
AF1
B
392 412Right-handed alpha
Helix 47
AF2
B
419 442Right-handed alpha
Helix 48
AF3
B
443 452Right-handed alpha
Helix 49
AF4
B
455 479Right-handed alpha
Helix 50
AF5
B
483 496Right-handed alpha
Helix 51
AF6
B
497 509Right-handed alpha
Helix 52
AF7
B
512 543Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9VEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 245first strand
Strand 2
A
260 265anti-parallel
Strand 3
A
212 217anti-parallel
Strand 4
A
280 281anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 316first strand
Strand 2
A
336 342anti-parallel
Strand 3
A
289 296anti-parallel
Strand 4
A
354 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 385first strand
Strand 2
A
388 391anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 245first strand
Strand 2
B
260 265anti-parallel
Strand 3
B
212 217anti-parallel
Strand 4
B
280 281anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 316first strand
Strand 2
B
336 342anti-parallel
Strand 3
B
289 296anti-parallel
Strand 4
B
354 356anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 385first strand
Strand 2
B
388 391anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il