Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VEC entry

There are 12 chains in PDB entry 9VEC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	THR 6	LYS 149
I	CYS 41	TYR 65
J	THR 104	LYS 569
B	THR 6	LYS 149
E	THR 6	LYS 149
H	THR 6	LYS 149
C	CYS 41	TYR 65
F	CYS 41	TYR 65
L	CYS 41	TYR 65
A	THR 104	LYS 569
D	THR 104	LYS 569
G	THR 104	LYS 569

There are108 helices in PDB entry 9VEC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	8	22	Right-handed alpha
Helix 2	AA2	K	29	39	Right-handed alpha
Helix 3	AA3	K	45	54	Right-handed alpha
Helix 4	AA4	K	65	74	Right-handed alpha
Helix 5	AA5	K	79	92	Right-handed alpha
Helix 6	AA6	K	103	113	Right-handed alpha
Helix 7	AA7	K	118	127	Right-handed alpha
Helix 8	AA8	K	139	149	Right-handed alpha
Helix 9	AA9	I	42	65	Right-handed alpha
Helix 10	AB1	J	106	115	Right-handed alpha
Helix 11	AB2	J	121	143	Right-handed alpha
Helix 12	AB3	J	168	178	Right-handed alpha
Helix 13	AB4	J	179	181	Right-handed 310
Helix 14	AB5	J	185	195	Right-handed alpha
Helix 15	AB6	J	196	216	Right-handed alpha
Helix 16	AB7	J	224	229	Right-handed alpha
Helix 17	AB8	J	229	237	Right-handed alpha
Helix 18	AB9	J	238	241	Right-handed 310
Helix 19	AC1	J	245	258	Right-handed alpha
Helix 20	AC2	J	258	285	Right-handed alpha
Helix 21	AC3	J	298	311	Right-handed alpha
Helix 22	AC4	J	322	358	Right-handed alpha
Helix 23	AC5	J	363	366	Right-handed 310
Helix 24	AC6	J	367	384	Right-handed alpha
Helix 25	AC7	J	391	396	Right-handed 310
Helix 26	AC8	J	507	533	Right-handed alpha
Helix 27	AC9	J	537	568	Right-handed alpha
Helix 28	AD1	B	8	22	Right-handed alpha
Helix 29	AD2	B	29	39	Right-handed alpha
Helix 30	AD3	B	45	54	Right-handed alpha
Helix 31	AD4	B	65	74	Right-handed alpha
Helix 32	AD5	B	79	92	Right-handed alpha
Helix 33	AD6	B	103	113	Right-handed alpha
Helix 34	AD7	B	118	127	Right-handed alpha
Helix 35	AD8	B	139	149	Right-handed alpha
Helix 36	AD9	E	8	22	Right-handed alpha
Helix 37	AE1	E	29	39	Right-handed alpha
Helix 38	AE2	E	45	54	Right-handed alpha
Helix 39	AE3	E	65	74	Right-handed alpha
Helix 40	AE4	E	79	92	Right-handed alpha
Helix 41	AE5	E	103	113	Right-handed alpha
Helix 42	AE6	E	118	127	Right-handed alpha
Helix 43	AE7	E	139	149	Right-handed alpha
Helix 44	AE8	H	8	22	Right-handed alpha
Helix 45	AE9	H	29	39	Right-handed alpha
Helix 46	AF1	H	45	54	Right-handed alpha
Helix 47	AF2	H	65	74	Right-handed alpha
Helix 48	AF3	H	79	92	Right-handed alpha
Helix 49	AF4	H	103	113	Right-handed alpha
Helix 50	AF5	H	118	127	Right-handed alpha
Helix 51	AF6	H	139	149	Right-handed alpha
Helix 52	AF7	C	42	65	Right-handed alpha
Helix 53	AF8	F	42	65	Right-handed alpha
Helix 54	AF9	L	42	65	Right-handed alpha
Helix 55	AG1	A	106	115	Right-handed alpha
Helix 56	AG2	A	121	143	Right-handed alpha
Helix 57	AG3	A	168	178	Right-handed alpha
Helix 58	AG4	A	179	181	Right-handed 310
Helix 59	AG5	A	185	195	Right-handed alpha
Helix 60	AG6	A	196	216	Right-handed alpha
Helix 61	AG7	A	224	229	Right-handed alpha
Helix 62	AG8	A	229	237	Right-handed alpha
Helix 63	AG9	A	238	241	Right-handed 310
Helix 64	AH1	A	245	258	Right-handed alpha
Helix 65	AH2	A	258	285	Right-handed alpha
Helix 66	AH3	A	298	311	Right-handed alpha
Helix 67	AH4	A	322	358	Right-handed alpha
Helix 68	AH5	A	363	366	Right-handed 310
Helix 69	AH6	A	367	384	Right-handed alpha
Helix 70	AH7	A	391	396	Right-handed 310
Helix 71	AH8	A	507	533	Right-handed alpha
Helix 72	AH9	A	537	568	Right-handed alpha
Helix 73	AI1	D	106	115	Right-handed alpha
Helix 74	AI2	D	121	143	Right-handed alpha
Helix 75	AI3	D	168	178	Right-handed alpha
Helix 76	AI4	D	179	181	Right-handed 310
Helix 77	AI5	D	185	195	Right-handed alpha
Helix 78	AI6	D	196	216	Right-handed alpha
Helix 79	AI7	D	224	229	Right-handed alpha
Helix 80	AI8	D	229	237	Right-handed alpha
Helix 81	AI9	D	238	241	Right-handed 310
Helix 82	AJ1	D	245	258	Right-handed alpha
Helix 83	AJ2	D	258	285	Right-handed alpha
Helix 84	AJ3	D	298	311	Right-handed alpha
Helix 85	AJ4	D	322	358	Right-handed alpha
Helix 86	AJ5	D	363	366	Right-handed 310
Helix 87	AJ6	D	367	384	Right-handed alpha
Helix 88	AJ7	D	391	396	Right-handed 310
Helix 89	AJ8	D	507	533	Right-handed alpha
Helix 90	AJ9	D	537	568	Right-handed alpha
Helix 91	AK1	G	106	115	Right-handed alpha
Helix 92	AK2	G	121	143	Right-handed alpha
Helix 93	AK3	G	168	178	Right-handed alpha
Helix 94	AK4	G	179	181	Right-handed 310
Helix 95	AK5	G	185	195	Right-handed alpha
Helix 96	AK6	G	196	216	Right-handed alpha
Helix 97	AK7	G	224	229	Right-handed alpha
Helix 98	AK8	G	229	237	Right-handed alpha
Helix 99	AK9	G	238	241	Right-handed 310
Helix 100	AL1	G	245	258	Right-handed alpha
Helix 101	AL2	G	258	285	Right-handed alpha
Helix 102	AL3	G	298	311	Right-handed alpha
Helix 103	AL4	G	322	358	Right-handed alpha
Helix 104	AL5	G	363	366	Right-handed 310
Helix 105	AL6	G	367	384	Right-handed alpha
Helix 106	AL7	G	391	396	Right-handed 310
Helix 107	AL8	G	507	533	Right-handed alpha
Helix 108	AL9	G	537	568	Right-handed alpha

There are 4 sheets in PDB entry 9VEC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	102	first strand
Strand 2	K	136	138	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	136	138	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	136	138	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	102	first strand
Strand 2	H	136	138	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VEC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEC