Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VEE entry

There are 6 chains in PDB entry 9VEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 917	ASN 2752
F	SER 169	ARG 189
B	THR 917	ASN 2752
D	SER 169	ARG 189
C	THR 917	ASN 2752
E	SER 169	ARG 189

There are174 helices in PDB entry 9VEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	917	957	Right-handed alpha
Helix 2	AA2	A	963	972	Right-handed alpha
Helix 3	AA3	A	978	1002	Right-handed alpha
Helix 4	AA4	A	1018	1022	Right-handed 310
Helix 5	AA5	A	1027	1032	Right-handed alpha
Helix 6	AA6	A	1040	1046	Right-handed alpha
Helix 7	AA7	A	1052	1056	Right-handed 310
Helix 8	AA8	A	1061	1085	Right-handed alpha
Helix 9	AA9	A	1099	1104	Right-handed alpha
Helix 10	AB1	A	1106	1118	Right-handed alpha
Helix 11	AB2	A	1123	1139	Right-handed alpha
Helix 12	AB3	A	1140	1155	Right-handed alpha
Helix 13	AB4	A	1158	1185	Right-handed alpha
Helix 14	AB5	A	1195	1199	Right-handed 310
Helix 15	AB6	A	1205	1213	Right-handed alpha
Helix 16	AB7	A	1224	1244	Right-handed alpha
Helix 17	AB8	A	1248	1255	Right-handed alpha
Helix 18	AB9	A	1284	1295	Right-handed alpha
Helix 19	AC1	A	1297	1312	Right-handed alpha
Helix 20	AC2	A	1316	1335	Right-handed alpha
Helix 21	AC3	A	1338	1369	Right-handed alpha
Helix 22	AC4	A	1370	1375	Right-handed alpha
Helix 23	AC5	A	1378	1386	Right-handed alpha
Helix 24	AC6	A	1411	1430	Right-handed alpha
Helix 25	AC7	A	1431	1497	Right-handed alpha
Helix 26	AC8	A	1544	1548	Right-handed 310
Helix 27	AC9	A	1651	1694	Right-handed alpha
Helix 28	AD1	A	1699	1717	Right-handed alpha
Helix 29	AD2	A	1873	1878	Right-handed 310
Helix 30	AD3	A	1879	1886	Right-handed alpha
Helix 31	AD4	A	1891	1903	Right-handed alpha
Helix 32	AD5	A	1905	1921	Right-handed alpha
Helix 33	AD6	A	1921	1938	Right-handed alpha
Helix 34	AD7	A	1940	1942	Right-handed 310
Helix 35	AD8	A	1943	1953	Right-handed alpha
Helix 36	AD9	A	1961	1982	Right-handed alpha
Helix 37	AE1	A	2016	2036	Right-handed alpha
Helix 38	AE2	A	2167	2180	Right-handed alpha
Helix 39	AE3	A	2190	2206	Right-handed alpha
Helix 40	AE4	A	2207	2211	Right-handed 310
Helix 41	AE5	A	2231	2253	Right-handed alpha
Helix 42	AE6	A	2255	2277	Right-handed alpha
Helix 43	AE7	A	2277	2283	Right-handed alpha
Helix 44	AE8	A	2285	2288	Right-handed 310
Helix 45	AE9	A	2289	2312	Right-handed alpha
Helix 46	AF1	A	2328	2341	Right-handed alpha
Helix 47	AF2	A	2344	2355	Right-handed alpha
Helix 48	AF3	A	2361	2388	Right-handed alpha
Helix 49	AF4	A	2397	2425	Right-handed alpha
Helix 50	AF5	A	2490	2494	Right-handed 310
Helix 51	AF6	A	2510	2522	Right-handed alpha
Helix 52	AF7	A	2560	2571	Right-handed alpha
Helix 53	AF8	A	2574	2578	Right-handed 310
Helix 54	AF9	A	2607	2611	Right-handed 310
Helix 55	AG1	A	2669	2691	Right-handed alpha
Helix 56	AG2	A	2705	2721	Right-handed alpha
Helix 57	AG3	A	2723	2738	Right-handed alpha
Helix 58	AG4	F	172	189	Right-handed alpha
Helix 59	AG5	B	918	957	Right-handed alpha
Helix 60	AG6	B	963	972	Right-handed alpha
Helix 61	AG7	B	978	1002	Right-handed alpha
Helix 62	AG8	B	1018	1022	Right-handed 310
Helix 63	AG9	B	1027	1032	Right-handed alpha
Helix 64	AH1	B	1040	1046	Right-handed alpha
Helix 65	AH2	B	1052	1056	Right-handed 310
Helix 66	AH3	B	1061	1085	Right-handed alpha
Helix 67	AH4	B	1099	1104	Right-handed alpha
Helix 68	AH5	B	1106	1118	Right-handed alpha
Helix 69	AH6	B	1123	1139	Right-handed alpha
Helix 70	AH7	B	1140	1155	Right-handed alpha
Helix 71	AH8	B	1158	1185	Right-handed alpha
Helix 72	AH9	B	1195	1199	Right-handed 310
Helix 73	AI1	B	1205	1213	Right-handed alpha
Helix 74	AI2	B	1224	1244	Right-handed alpha
Helix 75	AI3	B	1248	1255	Right-handed alpha
Helix 76	AI4	B	1284	1295	Right-handed alpha
Helix 77	AI5	B	1297	1312	Right-handed alpha
Helix 78	AI6	B	1316	1335	Right-handed alpha
Helix 79	AI7	B	1338	1369	Right-handed alpha
Helix 80	AI8	B	1370	1375	Right-handed alpha
Helix 81	AI9	B	1378	1386	Right-handed alpha
Helix 82	AJ1	B	1411	1430	Right-handed alpha
Helix 83	AJ2	B	1431	1497	Right-handed alpha
Helix 84	AJ3	B	1544	1548	Right-handed 310
Helix 85	AJ4	B	1651	1694	Right-handed alpha
Helix 86	AJ5	B	1699	1717	Right-handed alpha
Helix 87	AJ6	B	1873	1878	Right-handed 310
Helix 88	AJ7	B	1879	1886	Right-handed alpha
Helix 89	AJ8	B	1891	1903	Right-handed alpha
Helix 90	AJ9	B	1905	1921	Right-handed alpha
Helix 91	AK1	B	1921	1938	Right-handed alpha
Helix 92	AK2	B	1940	1942	Right-handed 310
Helix 93	AK3	B	1943	1953	Right-handed alpha
Helix 94	AK4	B	1961	1982	Right-handed alpha
Helix 95	AK5	B	2016	2036	Right-handed alpha
Helix 96	AK6	B	2167	2180	Right-handed alpha
Helix 97	AK7	B	2190	2206	Right-handed alpha
Helix 98	AK8	B	2207	2211	Right-handed 310
Helix 99	AK9	B	2231	2253	Right-handed alpha
Helix 100	AL1	B	2255	2277	Right-handed alpha
Helix 101	AL2	B	2277	2283	Right-handed alpha
Helix 102	AL3	B	2285	2288	Right-handed 310
Helix 103	AL4	B	2289	2312	Right-handed alpha
Helix 104	AL5	B	2328	2341	Right-handed alpha
Helix 105	AL6	B	2344	2355	Right-handed alpha
Helix 106	AL7	B	2361	2388	Right-handed alpha
Helix 107	AL8	B	2397	2425	Right-handed alpha
Helix 108	AL9	B	2490	2494	Right-handed 310
Helix 109	AM1	B	2510	2522	Right-handed alpha
Helix 110	AM2	B	2560	2571	Right-handed alpha
Helix 111	AM3	B	2574	2578	Right-handed 310
Helix 112	AM4	B	2607	2611	Right-handed 310
Helix 113	AM5	B	2669	2691	Right-handed alpha
Helix 114	AM6	B	2705	2721	Right-handed alpha
Helix 115	AM7	B	2723	2738	Right-handed alpha
Helix 116	AM8	D	172	189	Right-handed alpha
Helix 117	AM9	C	918	957	Right-handed alpha
Helix 118	AN1	C	963	972	Right-handed alpha
Helix 119	AN2	C	978	1002	Right-handed alpha
Helix 120	AN3	C	1018	1022	Right-handed 310
Helix 121	AN4	C	1027	1032	Right-handed alpha
Helix 122	AN5	C	1040	1046	Right-handed alpha
Helix 123	AN6	C	1052	1056	Right-handed 310
Helix 124	AN7	C	1061	1085	Right-handed alpha
Helix 125	AN8	C	1099	1104	Right-handed alpha
Helix 126	AN9	C	1106	1118	Right-handed alpha
Helix 127	AO1	C	1123	1139	Right-handed alpha
Helix 128	AO2	C	1140	1155	Right-handed alpha
Helix 129	AO3	C	1158	1185	Right-handed alpha
Helix 130	AO4	C	1195	1199	Right-handed 310
Helix 131	AO5	C	1205	1213	Right-handed alpha
Helix 132	AO6	C	1224	1244	Right-handed alpha
Helix 133	AO7	C	1248	1255	Right-handed alpha
Helix 134	AO8	C	1284	1295	Right-handed alpha
Helix 135	AO9	C	1297	1312	Right-handed alpha
Helix 136	AP1	C	1316	1335	Right-handed alpha
Helix 137	AP2	C	1338	1369	Right-handed alpha
Helix 138	AP3	C	1370	1375	Right-handed alpha
Helix 139	AP4	C	1378	1386	Right-handed alpha
Helix 140	AP5	C	1411	1430	Right-handed alpha
Helix 141	AP6	C	1431	1497	Right-handed alpha
Helix 142	AP7	C	1544	1548	Right-handed 310
Helix 143	AP8	C	1651	1694	Right-handed alpha
Helix 144	AP9	C	1699	1717	Right-handed alpha
Helix 145	AQ1	C	1873	1878	Right-handed 310
Helix 146	AQ2	C	1879	1886	Right-handed alpha
Helix 147	AQ3	C	1891	1903	Right-handed alpha
Helix 148	AQ4	C	1905	1921	Right-handed alpha
Helix 149	AQ5	C	1921	1938	Right-handed alpha
Helix 150	AQ6	C	1940	1942	Right-handed 310
Helix 151	AQ7	C	1943	1953	Right-handed alpha
Helix 152	AQ8	C	1961	1982	Right-handed alpha
Helix 153	AQ9	C	2016	2036	Right-handed alpha
Helix 154	AR1	C	2167	2180	Right-handed alpha
Helix 155	AR2	C	2190	2206	Right-handed alpha
Helix 156	AR3	C	2207	2211	Right-handed 310
Helix 157	AR4	C	2231	2253	Right-handed alpha
Helix 158	AR5	C	2255	2277	Right-handed alpha
Helix 159	AR6	C	2277	2283	Right-handed alpha
Helix 160	AR7	C	2285	2288	Right-handed 310
Helix 161	AR8	C	2289	2312	Right-handed alpha
Helix 162	AR9	C	2328	2341	Right-handed alpha
Helix 163	AS1	C	2344	2355	Right-handed alpha
Helix 164	AS2	C	2361	2388	Right-handed alpha
Helix 165	AS3	C	2397	2425	Right-handed alpha
Helix 166	AS4	C	2490	2494	Right-handed 310
Helix 167	AS5	C	2510	2522	Right-handed alpha
Helix 168	AS6	C	2560	2571	Right-handed alpha
Helix 169	AS7	C	2574	2578	Right-handed 310
Helix 170	AS8	C	2607	2611	Right-handed 310
Helix 171	AS9	C	2669	2691	Right-handed alpha
Helix 172	AT1	C	2705	2721	Right-handed alpha
Helix 173	AT2	C	2723	2738	Right-handed alpha
Helix 174	AT3	E	172	189	Right-handed alpha

There are 9 sheets in PDB entry 9VEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2450	2453	first strand
Strand 2	A	2438	2445	anti-parallel
Strand 3	A	2530	2537	anti-parallel
Strand 4	A	2548	2555	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2461	2462	first strand
Strand 2	A	2495	2499	anti-parallel
Strand 3	A	2648	2652	anti-parallel
Strand 4	A	2590	2591	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2581	2587	first strand
Strand 2	A	2612	2617	anti-parallel
Strand 3	A	2632	2634	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2450	2453	first strand
Strand 2	B	2438	2445	anti-parallel
Strand 3	B	2530	2537	anti-parallel
Strand 4	B	2548	2555	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2461	2462	first strand
Strand 2	B	2495	2499	anti-parallel
Strand 3	B	2648	2652	anti-parallel
Strand 4	B	2590	2591	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2581	2587	first strand
Strand 2	B	2612	2617	anti-parallel
Strand 3	B	2632	2634	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2450	2453	first strand
Strand 2	C	2438	2445	anti-parallel
Strand 3	C	2530	2537	anti-parallel
Strand 4	C	2548	2555	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2461	2462	first strand
Strand 2	C	2495	2499	anti-parallel
Strand 3	C	2648	2652	anti-parallel
Strand 4	C	2590	2591	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2581	2587	first strand
Strand 2	C	2612	2617	anti-parallel
Strand 3	C	2632	2634	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEE