Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VEF entry

There are 6 chains in PDB entry 9VEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 917ASN 2752
B
 ALA 225SER 246
C
 THR 917ASN 2752
D
 ALA 225SER 246
E
 THR 917ASN 2752
F
 ALA 225SER 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are170 helices in PDB entry 9VEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
917 957Right-handed alpha
Helix 2
AA2
A
964 973Right-handed alpha
Helix 3
AA3
A
978 1000Right-handed alpha
Helix 4
AA4
A
1018 1022Right-handed 310
Helix 5
AA5
A
1040 1046Right-handed alpha
Helix 6
AA6
A
1052 1056Right-handed 310
Helix 7
AA7
A
1061 1083Right-handed alpha
Helix 8
AA8
A
1099 1104Right-handed alpha
Helix 9
AA9
A
1106 1118Right-handed alpha
Helix 10
AB1
A
1123 1139Right-handed alpha
Helix 11
AB2
A
1140 1156Right-handed alpha
Helix 12
AB3
A
1158 1164Right-handed alpha
Helix 13
AB4
A
1165 1186Right-handed alpha
Helix 14
AB5
A
1195 1199Right-handed 310
Helix 15
AB6
A
1205 1213Right-handed alpha
Helix 16
AB7
A
1224 1244Right-handed alpha
Helix 17
AB8
A
1248 1255Right-handed alpha
Helix 18
AB9
A
1284 1295Right-handed alpha
Helix 19
AC1
A
1297 1312Right-handed alpha
Helix 20
AC2
A
1316 1335Right-handed alpha
Helix 21
AC3
A
1338 1369Right-handed alpha
Helix 22
AC4
A
1370 1375Right-handed alpha
Helix 23
AC5
A
1378 1386Right-handed alpha
Helix 24
AC6
A
1411 1430Right-handed alpha
Helix 25
AC7
A
1431 1498Right-handed alpha
Helix 26
AC8
A
1544 1548Right-handed 310
Helix 27
AC9
A
1651 1693Right-handed alpha
Helix 28
AD1
A
1699 1716Right-handed alpha
Helix 29
AD2
A
1879 1886Right-handed alpha
Helix 30
AD3
A
1891 1903Right-handed alpha
Helix 31
AD4
A
1905 1921Right-handed alpha
Helix 32
AD5
A
1921 1938Right-handed alpha
Helix 33
AD6
A
1940 1943Right-handed 310
Helix 34
AD7
A
1944 1953Right-handed alpha
Helix 35
AD8
A
1961 1983Right-handed alpha
Helix 36
AD9
A
2003 2007Right-handed alpha
Helix 37
AE1
A
2016 2036Right-handed alpha
Helix 38
AE2
A
2167 2180Right-handed alpha
Helix 39
AE3
A
2190 2206Right-handed alpha
Helix 40
AE4
A
2231 2253Right-handed alpha
Helix 41
AE5
A
2255 2274Right-handed alpha
Helix 42
AE6
A
2277 2282Right-handed alpha
Helix 43
AE7
A
2289 2312Right-handed alpha
Helix 44
AE8
A
2328 2341Right-handed alpha
Helix 45
AE9
A
2344 2355Right-handed alpha
Helix 46
AF1
A
2361 2388Right-handed alpha
Helix 47
AF2
A
2397 2426Right-handed alpha
Helix 48
AF3
A
2479 2484Right-handed alpha
Helix 49
AF4
A
2510 2522Right-handed alpha
Helix 50
AF5
A
2560 2571Right-handed alpha
Helix 51
AF6
A
2575 2579Right-handed 310
Helix 52
AF7
A
2669 2689Right-handed alpha
Helix 53
AF8
A
2690 2694Right-handed 310
Helix 54
AF9
A
2705 2721Right-handed alpha
Helix 55
AG1
A
2724 2738Right-handed alpha
Helix 56
AG2
A
2742 2746Right-handed 310
Helix 57
AG3
B
230 240Right-handed alpha
Helix 58
AG4
C
918 957Right-handed alpha
Helix 59
AG5
C
964 973Right-handed alpha
Helix 60
AG6
C
978 1000Right-handed alpha
Helix 61
AG7
C
1018 1022Right-handed 310
Helix 62
AG8
C
1040 1046Right-handed alpha
Helix 63
AG9
C
1052 1056Right-handed 310
Helix 64
AH1
C
1061 1083Right-handed alpha
Helix 65
AH2
C
1099 1104Right-handed alpha
Helix 66
AH3
C
1106 1118Right-handed alpha
Helix 67
AH4
C
1123 1139Right-handed alpha
Helix 68
AH5
C
1140 1156Right-handed alpha
Helix 69
AH6
C
1158 1164Right-handed alpha
Helix 70
AH7
C
1165 1186Right-handed alpha
Helix 71
AH8
C
1195 1199Right-handed 310
Helix 72
AH9
C
1205 1213Right-handed alpha
Helix 73
AI1
C
1224 1244Right-handed alpha
Helix 74
AI2
C
1248 1255Right-handed alpha
Helix 75
AI3
C
1284 1295Right-handed alpha
Helix 76
AI4
C
1297 1312Right-handed alpha
Helix 77
AI5
C
1316 1335Right-handed alpha
Helix 78
AI6
C
1338 1369Right-handed alpha
Helix 79
AI7
C
1370 1375Right-handed alpha
Helix 80
AI8
C
1378 1386Right-handed alpha
Helix 81
AI9
C
1411 1430Right-handed alpha
Helix 82
AJ1
C
1431 1498Right-handed alpha
Helix 83
AJ2
C
1544 1548Right-handed 310
Helix 84
AJ3
C
1651 1693Right-handed alpha
Helix 85
AJ4
C
1699 1716Right-handed alpha
Helix 86
AJ5
C
1879 1886Right-handed alpha
Helix 87
AJ6
C
1891 1903Right-handed alpha
Helix 88
AJ7
C
1905 1921Right-handed alpha
Helix 89
AJ8
C
1921 1938Right-handed alpha
Helix 90
AJ9
C
1940 1943Right-handed 310
Helix 91
AK1
C
1944 1953Right-handed alpha
Helix 92
AK2
C
1961 1983Right-handed alpha
Helix 93
AK3
C
2016 2036Right-handed alpha
Helix 94
AK4
C
2167 2180Right-handed alpha
Helix 95
AK5
C
2190 2206Right-handed alpha
Helix 96
AK6
C
2231 2253Right-handed alpha
Helix 97
AK7
C
2255 2274Right-handed alpha
Helix 98
AK8
C
2277 2282Right-handed alpha
Helix 99
AK9
C
2289 2312Right-handed alpha
Helix 100
AL1
C
2328 2341Right-handed alpha
Helix 101
AL2
C
2344 2355Right-handed alpha
Helix 102
AL3
C
2361 2388Right-handed alpha
Helix 103
AL4
C
2397 2426Right-handed alpha
Helix 104
AL5
C
2479 2484Right-handed alpha
Helix 105
AL6
C
2510 2522Right-handed alpha
Helix 106
AL7
C
2560 2571Right-handed alpha
Helix 107
AL8
C
2575 2579Right-handed 310
Helix 108
AL9
C
2669 2689Right-handed alpha
Helix 109
AM1
C
2690 2694Right-handed 310
Helix 110
AM2
C
2705 2721Right-handed alpha
Helix 111
AM3
C
2724 2738Right-handed alpha
Helix 112
AM4
C
2742 2746Right-handed 310
Helix 113
AM5
D
230 240Right-handed alpha
Helix 114
AM6
E
918 957Right-handed alpha
Helix 115
AM7
E
964 973Right-handed alpha
Helix 116
AM8
E
978 1000Right-handed alpha
Helix 117
AM9
E
1018 1022Right-handed 310
Helix 118
AN1
E
1040 1046Right-handed alpha
Helix 119
AN2
E
1052 1056Right-handed 310
Helix 120
AN3
E
1061 1083Right-handed alpha
Helix 121
AN4
E
1099 1104Right-handed alpha
Helix 122
AN5
E
1106 1118Right-handed alpha
Helix 123
AN6
E
1123 1139Right-handed alpha
Helix 124
AN7
E
1140 1156Right-handed alpha
Helix 125
AN8
E
1158 1164Right-handed alpha
Helix 126
AN9
E
1165 1186Right-handed alpha
Helix 127
AO1
E
1195 1199Right-handed 310
Helix 128
AO2
E
1205 1213Right-handed alpha
Helix 129
AO3
E
1224 1244Right-handed alpha
Helix 130
AO4
E
1248 1255Right-handed alpha
Helix 131
AO5
E
1284 1295Right-handed alpha
Helix 132
AO6
E
1297 1312Right-handed alpha
Helix 133
AO7
E
1316 1335Right-handed alpha
Helix 134
AO8
E
1338 1369Right-handed alpha
Helix 135
AO9
E
1370 1375Right-handed alpha
Helix 136
AP1
E
1378 1386Right-handed alpha
Helix 137
AP2
E
1411 1430Right-handed alpha
Helix 138
AP3
E
1431 1498Right-handed alpha
Helix 139
AP4
E
1544 1548Right-handed 310
Helix 140
AP5
E
1651 1693Right-handed alpha
Helix 141
AP6
E
1699 1716Right-handed alpha
Helix 142
AP7
E
1879 1886Right-handed alpha
Helix 143
AP8
E
1891 1903Right-handed alpha
Helix 144
AP9
E
1905 1921Right-handed alpha
Helix 145
AQ1
E
1921 1938Right-handed alpha
Helix 146
AQ2
E
1940 1943Right-handed 310
Helix 147
AQ3
E
1944 1953Right-handed alpha
Helix 148
AQ4
E
1961 1983Right-handed alpha
Helix 149
AQ5
E
2003 2007Right-handed alpha
Helix 150
AQ6
E
2016 2036Right-handed alpha
Helix 151
AQ7
E
2167 2180Right-handed alpha
Helix 152
AQ8
E
2190 2206Right-handed alpha
Helix 153
AQ9
E
2231 2253Right-handed alpha
Helix 154
AR1
E
2255 2274Right-handed alpha
Helix 155
AR2
E
2277 2282Right-handed alpha
Helix 156
AR3
E
2289 2312Right-handed alpha
Helix 157
AR4
E
2328 2341Right-handed alpha
Helix 158
AR5
E
2344 2355Right-handed alpha
Helix 159
AR6
E
2361 2388Right-handed alpha
Helix 160
AR7
E
2397 2426Right-handed alpha
Helix 161
AR8
E
2479 2484Right-handed alpha
Helix 162
AR9
E
2510 2522Right-handed alpha
Helix 163
AS1
E
2560 2571Right-handed alpha
Helix 164
AS2
E
2575 2579Right-handed 310
Helix 165
AS3
E
2669 2689Right-handed alpha
Helix 166
AS4
E
2690 2694Right-handed 310
Helix 167
AS5
E
2705 2721Right-handed alpha
Helix 168
AS6
E
2724 2738Right-handed alpha
Helix 169
AS7
E
2742 2746Right-handed 310
Helix 170
AS8
F
230 240Right-handed alpha
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There are 9 sheets in PDB entry 9VEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2450 2454first strand
Strand 2
A
2438 2445anti-parallel
Strand 3
A
2530 2537anti-parallel
Strand 4
A
2548 2554anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2461 2462first strand
Strand 2
A
2494 2499anti-parallel
Strand 3
A
2648 2653anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2581 2587first strand
Strand 2
A
2612 2617anti-parallel
Strand 3
A
2632 2635anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2450 2454first strand
Strand 2
C
2438 2445anti-parallel
Strand 3
C
2530 2537anti-parallel
Strand 4
C
2548 2554anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2461 2462first strand
Strand 2
C
2494 2499anti-parallel
Strand 3
C
2648 2653anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2581 2587first strand
Strand 2
C
2612 2617anti-parallel
Strand 3
C
2632 2635anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2450 2454first strand
Strand 2
E
2438 2445anti-parallel
Strand 3
E
2530 2537anti-parallel
Strand 4
E
2548 2554anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2461 2462first strand
Strand 2
E
2494 2499anti-parallel
Strand 3
E
2648 2653anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2581 2587first strand
Strand 2
E
2612 2617anti-parallel
Strand 3
E
2632 2635anti-parallel
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