Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VEG entry

There are 6 chains in PDB entry 9VEG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 223	ASN 782
B	ASP 223	ASN 782
C	ASP 223	ASN 782
F	ASP 223	ASN 782
G	ASP 223	ASN 782
H	LYS 62	THR 461

There are 75 helices in PDB entry 9VEG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	234	241	Right-handed alpha
Helix 2	AA2	A	253	260	Right-handed 310
Helix 3	AA3	A	279	286	Right-handed alpha
Helix 4	AA4	A	293	297	Right-handed 310
Helix 5	AA5	A	463	472	Right-handed alpha
Helix 6	AA6	A	505	512	Right-handed alpha
Helix 7	AA7	A	545	554	Right-handed alpha
Helix 8	AA8	A	573	575	Right-handed 310
Helix 9	AA9	A	582	594	Right-handed alpha
Helix 10	AB1	A	605	609	Right-handed 310
Helix 11	AB2	A	668	674	Right-handed alpha
Helix 12	AB3	A	766	771	Right-handed alpha
Helix 13	AB4	B	234	241	Right-handed alpha
Helix 14	AB5	B	253	260	Right-handed 310
Helix 15	AB6	B	279	285	Right-handed alpha
Helix 16	AB7	B	293	297	Right-handed 310
Helix 17	AB8	B	463	472	Right-handed alpha
Helix 18	AB9	B	504	512	Right-handed alpha
Helix 19	AC1	B	545	554	Right-handed alpha
Helix 20	AC2	B	573	575	Right-handed 310
Helix 21	AC3	B	582	595	Right-handed alpha
Helix 22	AC4	B	605	609	Right-handed 310
Helix 23	AC5	B	668	675	Right-handed alpha
Helix 24	AC6	C	234	241	Right-handed alpha
Helix 25	AC7	C	253	260	Right-handed 310
Helix 26	AC8	C	279	285	Right-handed alpha
Helix 27	AC9	C	293	297	Right-handed 310
Helix 28	AD1	C	425	429	Right-handed 310
Helix 29	AD2	C	463	472	Right-handed alpha
Helix 30	AD3	C	504	512	Right-handed alpha
Helix 31	AD4	C	545	554	Right-handed alpha
Helix 32	AD5	C	573	575	Right-handed 310
Helix 33	AD6	C	582	595	Right-handed alpha
Helix 34	AD7	C	605	609	Right-handed 310
Helix 35	AD8	C	668	674	Right-handed alpha
Helix 36	AD9	C	766	770	Right-handed 310
Helix 37	AE1	F	234	241	Right-handed alpha
Helix 38	AE2	F	253	260	Right-handed 310
Helix 39	AE3	F	279	285	Right-handed alpha
Helix 40	AE4	F	293	297	Right-handed 310
Helix 41	AE5	F	463	472	Right-handed alpha
Helix 42	AE6	F	502	512	Right-handed alpha
Helix 43	AE7	F	545	553	Right-handed alpha
Helix 44	AE8	F	573	577	Right-handed 310
Helix 45	AE9	F	582	595	Right-handed alpha
Helix 46	AF1	F	605	609	Right-handed 310
Helix 47	AF2	F	668	675	Right-handed alpha
Helix 48	AF3	F	760	764	Right-handed 310
Helix 49	AF4	F	766	770	Right-handed 310
Helix 50	AF5	G	234	241	Right-handed alpha
Helix 51	AF6	G	253	258	Right-handed 310
Helix 52	AF7	G	279	285	Right-handed alpha
Helix 53	AF8	G	293	297	Right-handed 310
Helix 54	AF9	G	463	472	Right-handed alpha
Helix 55	AG1	G	505	512	Right-handed alpha
Helix 56	AG2	G	545	554	Right-handed alpha
Helix 57	AG3	G	573	575	Right-handed 310
Helix 58	AG4	G	582	595	Right-handed alpha
Helix 59	AG5	G	605	609	Right-handed 310
Helix 60	AG6	G	668	675	Right-handed alpha
Helix 61	AG7	G	760	764	Right-handed 310
Helix 62	AG8	H	70	85	Right-handed alpha
Helix 63	AG9	H	87	99	Right-handed alpha
Helix 64	AH1	H	100	104	Right-handed 310
Helix 65	AH2	H	107	113	Right-handed alpha
Helix 66	AH3	H	119	135	Right-handed alpha
Helix 67	AH4	H	149	154	Right-handed 310
Helix 68	AH5	H	166	178	Right-handed alpha
Helix 69	AH6	H	275	290	Right-handed alpha
Helix 70	AH7	H	292	304	Right-handed alpha
Helix 71	AH8	H	306	316	Right-handed alpha
Helix 72	AH9	H	324	337	Right-handed alpha
Helix 73	AI1	H	352	357	Right-handed 310
Helix 74	AI2	H	366	375	Right-handed alpha
Helix 75	AI3	H	416	420	Right-handed 310

There are 60 sheets in PDB entry 9VEG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	245	first strand
Strand 2	A	248	251	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	318	first strand
Strand 2	A	387	397	anti-parallel
Strand 3	A	447	449	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	439	first strand
Strand 2	A	387	397	anti-parallel
Strand 3	A	460	462	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	379	382	first strand
Strand 2	A	321	324	anti-parallel
Strand 3	A	377	382	anti-parallel
Strand 4	G	321	326	anti-parallel
Strand 5	G	376	382	anti-parallel
Strand 6	F	321	326	anti-parallel
Strand 7	F	376	380	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	406	first strand
Strand 2	A	430	433	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	423	first strand
Strand 2	A	409	414	anti-parallel
Strand 3	A	476	482	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	490	first strand
Strand 2	A	496	501	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	530	first strand
Strand 2	A	513	519	anti-parallel
Strand 3	A	616	621	parallel
Strand 4	A	577	581	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	558	561	first strand
Strand 2	A	564	567	anti-parallel
Strand 3	A	570	571	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	626	first strand
Strand 2	A	746	755	anti-parallel
Strand 3	A	654	658	anti-parallel
Strand 4	A	644	647	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	626	first strand
Strand 2	A	746	755	anti-parallel
Strand 3	A	680	688	anti-parallel
Strand 4	A	719	726	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	641	first strand
Strand 2	A	663	666	anti-parallel
Strand 3	A	735	739	anti-parallel
Strand 4	A	696	700	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	245	first strand
Strand 2	B	248	251	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	318	first strand
Strand 2	B	387	397	anti-parallel
Strand 3	B	447	449	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	439	first strand
Strand 2	B	387	397	anti-parallel
Strand 3	B	460	462	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	C	381	382	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	406	first strand
Strand 2	B	430	433	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	423	first strand
Strand 2	B	409	414	anti-parallel
Strand 3	B	476	482	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	490	first strand
Strand 2	B	496	501	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	530	first strand
Strand 2	B	513	519	anti-parallel
Strand 3	B	616	621	parallel
Strand 4	B	577	581	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	561	first strand
Strand 2	B	564	567	anti-parallel
Strand 3	B	570	571	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	626	first strand
Strand 2	B	746	755	anti-parallel
Strand 3	B	654	658	anti-parallel
Strand 4	B	644	647	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	626	first strand
Strand 2	B	746	755	anti-parallel
Strand 3	B	681	689	anti-parallel
Strand 4	B	719	723	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	638	641	first strand
Strand 2	B	664	667	anti-parallel
Strand 3	B	735	739	anti-parallel
Strand 4	B	696	700	anti-parallel
Strand 5	B	704	710	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	245	first strand
Strand 2	C	248	251	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	318	first strand
Strand 2	C	387	394	anti-parallel
Strand 3	C	447	449	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	310	318	first strand
Strand 2	C	387	394	anti-parallel
Strand 3	C	460	462	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	423	first strand
Strand 2	C	404	414	anti-parallel
Strand 3	C	476	490	anti-parallel
Strand 4	C	496	501	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	524	530	first strand
Strand 2	C	513	519	anti-parallel
Strand 3	C	616	621	parallel
Strand 4	C	577	581	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	561	first strand
Strand 2	C	564	567	anti-parallel
Strand 3	C	570	571	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	624	626	first strand
Strand 2	C	746	755	anti-parallel
Strand 3	C	654	658	anti-parallel
Strand 4	C	644	647	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	624	626	first strand
Strand 2	C	746	755	anti-parallel
Strand 3	C	680	688	anti-parallel
Strand 4	C	719	726	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	638	641	first strand
Strand 2	C	663	667	anti-parallel
Strand 3	C	735	739	anti-parallel
Strand 4	C	696	700	anti-parallel
Strand 5	C	709	710	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	242	245	first strand
Strand 2	F	248	251	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	318	first strand
Strand 2	F	387	397	anti-parallel
Strand 3	F	447	449	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	438	439	first strand
Strand 2	F	387	397	anti-parallel
Strand 3	F	460	462	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	418	423	first strand
Strand 2	F	403	413	anti-parallel
Strand 3	F	430	433	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	418	423	first strand
Strand 2	F	403	413	anti-parallel
Strand 3	F	477	490	anti-parallel
Strand 4	F	496	501	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	524	530	first strand
Strand 2	F	513	519	anti-parallel
Strand 3	F	616	620	parallel
Strand 4	F	578	580	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	558	561	first strand
Strand 2	F	564	567	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	624	626	first strand
Strand 2	F	746	755	anti-parallel
Strand 3	F	654	658	anti-parallel
Strand 4	F	644	647	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	624	626	first strand
Strand 2	F	746	755	anti-parallel
Strand 3	F	681	688	anti-parallel
Strand 4	F	719	725	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	639	641	first strand
Strand 2	F	664	666	anti-parallel
Strand 3	F	735	739	anti-parallel
Strand 4	F	696	700	anti-parallel
Strand 5	F	704	706	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	242	245	first strand
Strand 2	G	248	251	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	310	318	first strand
Strand 2	G	387	396	anti-parallel
Strand 3	G	447	449	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	438	439	first strand
Strand 2	G	387	396	anti-parallel
Strand 3	G	460	462	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	403	406	first strand
Strand 2	G	430	433	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	418	423	first strand
Strand 2	G	409	414	anti-parallel
Strand 3	G	476	482	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	486	490	first strand
Strand 2	G	496	501	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	524	530	first strand
Strand 2	G	513	519	anti-parallel
Strand 3	G	616	621	parallel
Strand 4	G	577	581	anti-parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	558	561	first strand
Strand 2	G	564	567	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	624	626	first strand
Strand 2	G	746	755	anti-parallel
Strand 3	G	654	658	anti-parallel
Strand 4	G	644	647	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	624	626	first strand
Strand 2	G	746	755	anti-parallel
Strand 3	G	679	688	anti-parallel
Strand 4	G	719	727	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	638	641	first strand
Strand 2	G	663	667	anti-parallel
Strand 3	G	735	739	anti-parallel
Strand 4	G	696	700	anti-parallel

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There are 5 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	148	first strand
Strand 2	H	203	209	anti-parallel
Strand 3	H	253	264	parallel
Strand 4	H	238	250	anti-parallel
Strand 5	H	180	182	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	161	first strand
Strand 2	H	164	165	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	188	191	first strand
Strand 2	H	229	234	anti-parallel
Strand 3	H	221	226	anti-parallel

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There are 5 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	345	351	first strand
Strand 2	H	402	408	anti-parallel
Strand 3	H	456	459	parallel
Strand 4	H	435	441	anti-parallel
Strand 5	H	378	381	anti-parallel

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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	385	388	first strand
Strand 2	H	428	431	anti-parallel
Strand 3	H	414	415	anti-parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	444	447	first strand
Strand 2	H	450	453	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VEG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEG