Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VEI entry

There are 12 chains in PDB entry 9VEI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 104	HIS 620
B	THR 6	LYS 149
C	CYS 41	TYR 81
E	THR 6	LYS 149
H	THR 6	LYS 149
K	THR 6	LYS 149
L	CYS 41	TYR 81
F	CYS 41	TYR 81
I	CYS 41	TYR 81
D	THR 104	HIS 620
G	THR 104	HIS 620
J	THR 104	HIS 620

There are116 helices in PDB entry 9VEI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	104	115	Right-handed alpha
Helix 2	AA2	A	118	146	Right-handed alpha
Helix 3	AA3	A	148	153	Right-handed 310
Helix 4	AA4	A	154	177	Right-handed alpha
Helix 5	AA5	A	178	180	Right-handed 310
Helix 6	AA6	A	181	184	Right-handed 310
Helix 7	AA7	A	185	194	Right-handed alpha
Helix 8	AA8	A	196	217	Right-handed alpha
Helix 9	AA9	A	226	238	Right-handed alpha
Helix 10	AB1	A	239	242	Right-handed 310
Helix 11	AB2	A	245	258	Right-handed alpha
Helix 12	AB3	A	258	285	Right-handed alpha
Helix 13	AB4	A	298	311	Right-handed alpha
Helix 14	AB5	A	322	337	Right-handed alpha
Helix 15	AB6	A	338	340	Right-handed 310
Helix 16	AB7	A	341	383	Right-handed alpha
Helix 17	AB8	A	507	534	Right-handed alpha
Helix 18	AB9	A	551	561	Right-handed alpha
Helix 19	AC1	A	588	620	Right-handed alpha
Helix 20	AC2	B	9	19	Right-handed alpha
Helix 21	AC3	B	29	41	Right-handed alpha
Helix 22	AC4	B	45	57	Right-handed alpha
Helix 23	AC5	B	68	74	Right-handed alpha
Helix 24	AC6	B	79	92	Right-handed alpha
Helix 25	AC7	B	103	113	Right-handed alpha
Helix 26	AC8	B	118	130	Right-handed alpha
Helix 27	AC9	B	138	147	Right-handed alpha
Helix 28	AD1	C	42	68	Right-handed alpha
Helix 29	AD2	C	75	80	Right-handed alpha
Helix 30	AD3	E	9	19	Right-handed alpha
Helix 31	AD4	E	29	41	Right-handed alpha
Helix 32	AD5	E	45	57	Right-handed alpha
Helix 33	AD6	E	68	74	Right-handed alpha
Helix 34	AD7	E	79	92	Right-handed alpha
Helix 35	AD8	E	103	113	Right-handed alpha
Helix 36	AD9	E	118	130	Right-handed alpha
Helix 37	AE1	E	138	147	Right-handed alpha
Helix 38	AE2	H	9	19	Right-handed alpha
Helix 39	AE3	H	29	41	Right-handed alpha
Helix 40	AE4	H	45	57	Right-handed alpha
Helix 41	AE5	H	68	74	Right-handed alpha
Helix 42	AE6	H	79	92	Right-handed alpha
Helix 43	AE7	H	103	113	Right-handed alpha
Helix 44	AE8	H	118	130	Right-handed alpha
Helix 45	AE9	H	138	147	Right-handed alpha
Helix 46	AF1	K	9	19	Right-handed alpha
Helix 47	AF2	K	29	41	Right-handed alpha
Helix 48	AF3	K	45	57	Right-handed alpha
Helix 49	AF4	K	68	74	Right-handed alpha
Helix 50	AF5	K	79	92	Right-handed alpha
Helix 51	AF6	K	103	113	Right-handed alpha
Helix 52	AF7	K	118	130	Right-handed alpha
Helix 53	AF8	K	138	147	Right-handed alpha
Helix 54	AF9	L	42	68	Right-handed alpha
Helix 55	AG1	L	75	80	Right-handed alpha
Helix 56	AG2	F	42	68	Right-handed alpha
Helix 57	AG3	F	75	80	Right-handed alpha
Helix 58	AG4	I	42	68	Right-handed alpha
Helix 59	AG5	I	75	80	Right-handed alpha
Helix 60	AG6	D	105	115	Right-handed alpha
Helix 61	AG7	D	118	146	Right-handed alpha
Helix 62	AG8	D	148	153	Right-handed 310
Helix 63	AG9	D	154	177	Right-handed alpha
Helix 64	AH1	D	178	180	Right-handed 310
Helix 65	AH2	D	181	184	Right-handed 310
Helix 66	AH3	D	185	194	Right-handed alpha
Helix 67	AH4	D	196	217	Right-handed alpha
Helix 68	AH5	D	226	238	Right-handed alpha
Helix 69	AH6	D	239	242	Right-handed 310
Helix 70	AH7	D	245	258	Right-handed alpha
Helix 71	AH8	D	258	285	Right-handed alpha
Helix 72	AH9	D	298	311	Right-handed alpha
Helix 73	AI1	D	322	337	Right-handed alpha
Helix 74	AI2	D	338	340	Right-handed 310
Helix 75	AI3	D	341	383	Right-handed alpha
Helix 76	AI4	D	507	534	Right-handed alpha
Helix 77	AI5	D	551	561	Right-handed alpha
Helix 78	AI6	D	588	620	Right-handed alpha
Helix 79	AI7	G	105	115	Right-handed alpha
Helix 80	AI8	G	118	146	Right-handed alpha
Helix 81	AI9	G	148	153	Right-handed 310
Helix 82	AJ1	G	154	177	Right-handed alpha
Helix 83	AJ2	G	178	180	Right-handed 310
Helix 84	AJ3	G	181	184	Right-handed 310
Helix 85	AJ4	G	185	194	Right-handed alpha
Helix 86	AJ5	G	196	217	Right-handed alpha
Helix 87	AJ6	G	226	238	Right-handed alpha
Helix 88	AJ7	G	239	242	Right-handed 310
Helix 89	AJ8	G	245	258	Right-handed alpha
Helix 90	AJ9	G	258	285	Right-handed alpha
Helix 91	AK1	G	298	311	Right-handed alpha
Helix 92	AK2	G	322	337	Right-handed alpha
Helix 93	AK3	G	338	340	Right-handed 310
Helix 94	AK4	G	341	383	Right-handed alpha
Helix 95	AK5	G	507	534	Right-handed alpha
Helix 96	AK6	G	551	561	Right-handed alpha
Helix 97	AK7	G	588	620	Right-handed alpha
Helix 98	AK8	J	105	115	Right-handed alpha
Helix 99	AK9	J	118	146	Right-handed alpha
Helix 100	AL1	J	148	153	Right-handed 310
Helix 101	AL2	J	154	177	Right-handed alpha
Helix 102	AL3	J	178	180	Right-handed 310
Helix 103	AL4	J	181	184	Right-handed 310
Helix 104	AL5	J	185	194	Right-handed alpha
Helix 105	AL6	J	196	217	Right-handed alpha
Helix 106	AL7	J	226	238	Right-handed alpha
Helix 107	AL8	J	239	242	Right-handed 310
Helix 108	AL9	J	245	258	Right-handed alpha
Helix 109	AM1	J	258	285	Right-handed alpha
Helix 110	AM2	J	298	311	Right-handed alpha
Helix 111	AM3	J	322	337	Right-handed alpha
Helix 112	AM4	J	338	340	Right-handed 310
Helix 113	AM5	J	341	383	Right-handed alpha
Helix 114	AM6	J	507	534	Right-handed alpha
Helix 115	AM7	J	551	561	Right-handed alpha
Helix 116	AM8	J	588	620	Right-handed alpha

There are 4 sheets in PDB entry 9VEI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	136	137	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	136	137	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	101	102	first strand
Strand 2	H	136	137	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	101	102	first strand
Strand 2	K	136	137	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VEI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEI