Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VEY entry

There are 8 chains in PDB entry 9VEY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ILE 336
B	SER 2	ILE 336
C	SER 2	ILE 336
D	SER 2	ILE 336
E	SER 2	ILE 336
F	SER 2	ILE 336
G	SER 2	ILE 336
H	SER 2	ILE 336

There are 88 helices in PDB entry 9VEY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	15	Right-handed 310
Helix 2	AA2	A	42	50	Right-handed alpha
Helix 3	AA3	A	134	140	Right-handed alpha
Helix 4	AA4	A	143	154	Right-handed alpha
Helix 5	AA5	A	170	183	Right-handed alpha
Helix 6	AA6	A	193	204	Right-handed alpha
Helix 7	AA7	A	216	225	Right-handed alpha
Helix 8	AA8	A	238	248	Right-handed alpha
Helix 9	AA9	A	270	276	Right-handed alpha
Helix 10	AB1	A	287	300	Right-handed alpha
Helix 11	AB2	A	315	325	Right-handed alpha
Helix 12	AB3	B	13	15	Right-handed 310
Helix 13	AB4	B	42	51	Right-handed alpha
Helix 14	AB5	B	134	140	Right-handed alpha
Helix 15	AB6	B	143	154	Right-handed alpha
Helix 16	AB7	B	170	183	Right-handed alpha
Helix 17	AB8	B	193	203	Right-handed alpha
Helix 18	AB9	B	216	225	Right-handed alpha
Helix 19	AC1	B	238	248	Right-handed alpha
Helix 20	AC2	B	270	276	Right-handed alpha
Helix 21	AC3	B	287	302	Right-handed alpha
Helix 22	AC4	B	315	325	Right-handed alpha
Helix 23	AC5	C	13	15	Right-handed 310
Helix 24	AC6	C	42	51	Right-handed alpha
Helix 25	AC7	C	134	140	Right-handed alpha
Helix 26	AC8	C	143	154	Right-handed alpha
Helix 27	AC9	C	170	183	Right-handed alpha
Helix 28	AD1	C	193	204	Right-handed alpha
Helix 29	AD2	C	216	225	Right-handed alpha
Helix 30	AD3	C	237	248	Right-handed alpha
Helix 31	AD4	C	270	276	Right-handed alpha
Helix 32	AD5	C	287	302	Right-handed alpha
Helix 33	AD6	C	315	325	Right-handed alpha
Helix 34	AD7	D	13	15	Right-handed 310
Helix 35	AD8	D	42	50	Right-handed alpha
Helix 36	AD9	D	134	140	Right-handed alpha
Helix 37	AE1	D	143	154	Right-handed alpha
Helix 38	AE2	D	170	183	Right-handed alpha
Helix 39	AE3	D	193	204	Right-handed alpha
Helix 40	AE4	D	216	225	Right-handed alpha
Helix 41	AE5	D	238	248	Right-handed alpha
Helix 42	AE6	D	270	276	Right-handed alpha
Helix 43	AE7	D	287	302	Right-handed alpha
Helix 44	AE8	D	315	326	Right-handed alpha
Helix 45	AE9	E	13	15	Right-handed 310
Helix 46	AF1	E	42	51	Right-handed alpha
Helix 47	AF2	E	134	140	Right-handed alpha
Helix 48	AF3	E	143	154	Right-handed alpha
Helix 49	AF4	E	170	183	Right-handed alpha
Helix 50	AF5	E	193	204	Right-handed alpha
Helix 51	AF6	E	216	225	Right-handed alpha
Helix 52	AF7	E	237	248	Right-handed alpha
Helix 53	AF8	E	270	276	Right-handed alpha
Helix 54	AF9	E	287	302	Right-handed alpha
Helix 55	AG1	E	315	325	Right-handed alpha
Helix 56	AG2	F	13	15	Right-handed 310
Helix 57	AG3	F	42	51	Right-handed alpha
Helix 58	AG4	F	134	139	Right-handed alpha
Helix 59	AG5	F	143	154	Right-handed alpha
Helix 60	AG6	F	170	183	Right-handed alpha
Helix 61	AG7	F	193	204	Right-handed alpha
Helix 62	AG8	F	216	225	Right-handed alpha
Helix 63	AG9	F	237	248	Right-handed alpha
Helix 64	AH1	F	270	276	Right-handed alpha
Helix 65	AH2	F	287	302	Right-handed alpha
Helix 66	AH3	F	315	325	Right-handed alpha
Helix 67	AH4	G	13	15	Right-handed 310
Helix 68	AH5	G	42	50	Right-handed alpha
Helix 69	AH6	G	134	140	Right-handed alpha
Helix 70	AH7	G	143	154	Right-handed alpha
Helix 71	AH8	G	170	183	Right-handed alpha
Helix 72	AH9	G	193	204	Right-handed alpha
Helix 73	AI1	G	216	225	Right-handed alpha
Helix 74	AI2	G	238	248	Right-handed alpha
Helix 75	AI3	G	270	276	Right-handed alpha
Helix 76	AI4	G	287	302	Right-handed alpha
Helix 77	AI5	G	315	326	Right-handed alpha
Helix 78	AI6	H	13	15	Right-handed 310
Helix 79	AI7	H	42	50	Right-handed alpha
Helix 80	AI8	H	134	140	Right-handed alpha
Helix 81	AI9	H	143	154	Right-handed alpha
Helix 82	AJ1	H	170	183	Right-handed alpha
Helix 83	AJ2	H	193	203	Right-handed alpha
Helix 84	AJ3	H	216	225	Right-handed alpha
Helix 85	AJ4	H	237	248	Right-handed alpha
Helix 86	AJ5	H	270	276	Right-handed alpha
Helix 87	AJ6	H	287	302	Right-handed alpha
Helix 88	AJ7	H	315	325	Right-handed alpha

There are 32 sheets in PDB entry 9VEY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	8	first strand
Strand 2	A	17	21	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	A	31	40	anti-parallel
Strand 3	A	66	72	anti-parallel
Strand 4	A	84	87	anti-parallel
Strand 5	A	126	128	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	A	31	40	anti-parallel
Strand 3	A	331	335	anti-parallel
Strand 4	A	307	312	parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	186	191	parallel
Strand 3	A	163	167	parallel
Strand 4	A	230	235	parallel
Strand 5	A	249	257	parallel
Strand 6	A	279	282	parallel
Strand 7	H	279	282	anti-parallel
Strand 8	H	249	257	parallel
Strand 9	H	230	235	parallel
Strand 10	H	163	167	parallel
Strand 11	H	186	191	parallel
Strand 12	H	207	210	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	H	265	269	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	8	first strand
Strand 2	B	17	21	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	31	40	anti-parallel
Strand 3	B	65	72	anti-parallel
Strand 4	B	84	87	anti-parallel
Strand 5	B	126	128	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	122	first strand
Strand 2	B	31	40	anti-parallel
Strand 3	B	331	335	anti-parallel
Strand 4	B	307	312	parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	210	first strand
Strand 2	B	186	191	parallel
Strand 3	B	163	167	parallel
Strand 4	B	230	235	parallel
Strand 5	B	249	258	parallel
Strand 6	B	279	283	parallel
Strand 7	E	279	282	anti-parallel
Strand 8	E	249	257	parallel
Strand 9	E	230	235	parallel
Strand 10	E	163	167	parallel
Strand 11	E	186	191	parallel
Strand 12	E	207	210	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	269	first strand
Strand 2	E	265	269	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	8	first strand
Strand 2	C	17	21	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	31	40	anti-parallel
Strand 3	C	66	72	anti-parallel
Strand 4	C	84	87	anti-parallel
Strand 5	C	126	128	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	31	40	anti-parallel
Strand 3	C	331	335	anti-parallel
Strand 4	C	307	312	parallel

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There are 12 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	210	first strand
Strand 2	C	186	191	parallel
Strand 3	C	163	167	parallel
Strand 4	C	230	235	parallel
Strand 5	C	249	257	parallel
Strand 6	C	279	282	parallel
Strand 7	G	279	282	anti-parallel
Strand 8	G	249	257	parallel
Strand 9	G	230	235	parallel
Strand 10	G	163	167	parallel
Strand 11	G	186	191	parallel
Strand 12	G	207	210	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	269	first strand
Strand 2	G	265	269	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	17	21	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	31	40	anti-parallel
Strand 3	D	66	72	anti-parallel
Strand 4	D	84	87	anti-parallel
Strand 5	D	126	128	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	31	40	anti-parallel
Strand 3	D	331	335	anti-parallel
Strand 4	D	307	312	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	210	first strand
Strand 2	D	186	191	parallel
Strand 3	D	163	167	parallel
Strand 4	D	230	235	parallel
Strand 5	D	249	257	parallel
Strand 6	D	279	282	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	8	first strand
Strand 2	E	17	21	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	122	first strand
Strand 2	E	31	40	anti-parallel
Strand 3	E	66	72	anti-parallel
Strand 4	E	84	87	anti-parallel
Strand 5	E	126	128	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	122	first strand
Strand 2	E	31	40	anti-parallel
Strand 3	E	331	335	anti-parallel
Strand 4	E	307	312	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	8	first strand
Strand 2	F	17	18	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	122	first strand
Strand 2	F	31	40	anti-parallel
Strand 3	F	65	72	anti-parallel
Strand 4	F	84	87	anti-parallel
Strand 5	F	126	128	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	122	first strand
Strand 2	F	31	40	anti-parallel
Strand 3	F	331	335	anti-parallel
Strand 4	F	307	312	parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	207	210	first strand
Strand 2	F	186	191	parallel
Strand 3	F	163	167	parallel
Strand 4	F	230	235	parallel
Strand 5	F	249	257	parallel
Strand 6	F	279	282	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	8	first strand
Strand 2	G	17	21	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	122	first strand
Strand 2	G	31	40	anti-parallel
Strand 3	G	66	72	anti-parallel
Strand 4	G	84	87	anti-parallel
Strand 5	G	126	128	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	118	122	first strand
Strand 2	G	31	40	anti-parallel
Strand 3	G	331	335	anti-parallel
Strand 4	G	307	312	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	8	first strand
Strand 2	H	17	21	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	122	first strand
Strand 2	H	31	40	anti-parallel
Strand 3	H	66	72	anti-parallel
Strand 4	H	84	87	anti-parallel
Strand 5	H	126	128	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	122	first strand
Strand 2	H	31	40	anti-parallel
Strand 3	H	331	335	anti-parallel
Strand 4	H	307	312	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VEY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VEY