Analysis of interatomic Contacts of Structural Units in PDB entry:
9VFC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VFC entry

There are 5 chains in PDB entry 9VFC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 35	SER 316
B	ALA 35	SER 316
C	ASP 36	PRO 317
D	ASP 36	SER 316
E	ALA 37	TYR 250

There are 93 helices in PDB entry 9VFC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	72	Right-handed alpha
Helix 2	AA2	A	72	77	Right-handed alpha
Helix 3	AA3	A	111	116	Right-handed alpha
Helix 4	AA4	A	116	132	Right-handed alpha
Helix 5	AA5	A	132	143	Right-handed alpha
Helix 6	AA6	A	145	167	Right-handed alpha
Helix 7	AA7	A	171	202	Right-handed alpha
Helix 8	AA8	A	209	232	Right-handed alpha
Helix 9	AA9	A	240	267	Right-handed alpha
Helix 10	AB1	A	268	276	Right-handed 310
Helix 11	AB2	A	280	311	Right-handed alpha
Helix 12	AB3	B	36	72	Right-handed alpha
Helix 13	AB4	B	72	78	Right-handed alpha
Helix 14	AB5	B	111	116	Right-handed alpha
Helix 15	AB6	B	116	132	Right-handed alpha
Helix 16	AB7	B	132	142	Right-handed alpha
Helix 17	AB8	B	145	167	Right-handed alpha
Helix 18	AB9	B	171	202	Right-handed alpha
Helix 19	AC1	B	209	233	Right-handed alpha
Helix 20	AC2	B	235	239	Right-handed 310
Helix 21	AC3	B	240	266	Right-handed alpha
Helix 22	AC4	B	268	276	Right-handed 310
Helix 23	AC5	B	280	310	Right-handed alpha
Helix 24	AC6	C	37	72	Right-handed alpha
Helix 25	AC7	C	72	78	Right-handed alpha
Helix 26	AC8	C	111	116	Right-handed alpha
Helix 27	AC9	C	116	132	Right-handed alpha
Helix 28	AD1	C	132	142	Right-handed alpha
Helix 29	AD2	C	145	167	Right-handed alpha
Helix 30	AD3	C	171	203	Right-handed alpha
Helix 31	AD4	C	209	233	Right-handed alpha
Helix 32	AD5	C	240	255	Right-handed alpha
Helix 33	AD6	C	255	267	Right-handed alpha
Helix 34	AD7	C	268	276	Right-handed 310
Helix 35	AD8	C	280	310	Right-handed alpha
Helix 36	AD9	D	37	72	Right-handed alpha
Helix 37	AE1	D	72	78	Right-handed alpha
Helix 38	AE2	D	111	116	Right-handed alpha
Helix 39	AE3	D	116	132	Right-handed alpha
Helix 40	AE4	D	132	141	Right-handed alpha
Helix 41	AE5	D	145	167	Right-handed alpha
Helix 42	AE6	D	171	202	Right-handed alpha
Helix 43	AE7	D	209	233	Right-handed alpha
Helix 44	AE8	D	240	266	Right-handed alpha
Helix 45	AE9	D	268	272	Right-handed 310
Helix 46	AF1	D	280	310	Right-handed alpha
Helix 47	AF2	E	38	72	Right-handed alpha
Helix 48	AF3	E	72	78	Right-handed alpha
Helix 49	AF4	E	111	116	Right-handed alpha
Helix 50	AF5	E	116	132	Right-handed alpha
Helix 51	AF6	E	132	142	Right-handed alpha
Helix 52	AF7	E	145	167	Right-handed alpha
Helix 53	AF8	E	171	202	Right-handed alpha
Helix 54	AF9	E	209	232	Right-handed alpha
Helix 55	AG1	E	240	267	Right-handed alpha
Helix 56	AG2	E	268	276	Right-handed 310
Helix 57	AG3	E	280	311	Right-handed alpha
Helix 58	AG4	F	38	72	Right-handed alpha
Helix 59	AG5	F	72	77	Right-handed alpha
Helix 60	AG6	F	111	116	Right-handed alpha
Helix 61	AG7	F	116	132	Right-handed alpha
Helix 62	AG8	F	132	142	Right-handed alpha
Helix 63	AG9	F	145	167	Right-handed alpha
Helix 64	AH1	F	171	202	Right-handed alpha
Helix 65	AH2	F	209	233	Right-handed alpha
Helix 66	AH3	F	240	255	Right-handed alpha
Helix 67	AH4	F	255	267	Right-handed alpha
Helix 68	AH5	F	268	272	Right-handed 310
Helix 69	AH6	F	280	311	Right-handed alpha
Helix 70	AH7	G	37	72	Right-handed alpha
Helix 71	AH8	G	72	77	Right-handed alpha
Helix 72	AH9	G	111	116	Right-handed alpha
Helix 73	AI1	G	116	132	Right-handed alpha
Helix 74	AI2	G	132	142	Right-handed alpha
Helix 75	AI3	G	145	167	Right-handed alpha
Helix 76	AI4	G	171	201	Right-handed alpha
Helix 77	AI5	G	209	233	Right-handed alpha
Helix 78	AI6	G	234	239	Right-handed 310
Helix 79	AI7	G	240	267	Right-handed alpha
Helix 80	AI8	G	268	276	Right-handed 310
Helix 81	AI9	G	280	310	Right-handed alpha
Helix 82	AJ1	H	37	72	Right-handed alpha
Helix 83	AJ2	H	72	78	Right-handed alpha
Helix 84	AJ3	H	111	116	Right-handed alpha
Helix 85	AJ4	H	116	132	Right-handed alpha
Helix 86	AJ5	H	132	142	Right-handed alpha
Helix 87	AJ6	H	145	167	Right-handed alpha
Helix 88	AJ7	H	171	202	Right-handed alpha
Helix 89	AJ8	H	209	233	Right-handed alpha
Helix 90	AJ9	H	240	255	Right-handed alpha
Helix 91	AK1	H	255	267	Right-handed alpha
Helix 92	AK2	H	268	276	Right-handed 310
Helix 93	AK3	H	280	310	Right-handed alpha

There are 8 sheets in PDB entry 9VFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	88	first strand
Strand 2	A	100	110	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	89	first strand
Strand 2	B	99	110	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	88	first strand
Strand 2	C	100	110	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	79	89	first strand
Strand 2	D	99	110	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	79	89	first strand
Strand 2	E	99	110	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	79	88	first strand
Strand 2	F	100	110	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	89	first strand
Strand 2	G	99	110	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	79	88	first strand
Strand 2	H	100	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VFC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VFC