Analysis of interatomic Contacts of Structural Units in PDB entry:
9VFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VFP entry

There are 3 chains in PDB entry 9VFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 71THR 291
B
 ASN 30ARG 251
C
 GLY 1GLU 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9VFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 80Right-handed alpha
Helix 2
AA2
A
111 119Right-handed alpha
Helix 3
AA3
A
163 168Right-handed 310
Helix 4
AA4
B
35 37Right-handed 310
Helix 5
AA5
B
83 87Right-handed 310
Helix 6
AA6
B
89 99Right-handed alpha
Helix 7
AA7
B
149 154Right-handed alpha
Helix 8
AA8
B
173 180Right-handed 310
Helix 9
AA9
C
42 48Right-handed alpha
Helix 10
AB1
C
62 68Right-handed 310
Helix 11
AB2
C
92 96Right-handed 310
Helix 12
AB3
C
97 103Right-handed alpha
Helix 13
AB4
C
104 106Right-handed 310
Helix 14
AB5
C
143 149Right-handed alpha
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There are 11 sheets in PDB entry 9VFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 91first strand
Strand 2
A
242 248anti-parallel
Strand 3
A
121 136anti-parallel
Strand 4
A
196 197anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 187first strand
Strand 2
A
121 136anti-parallel
Strand 3
A
250 258anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
227 232anti-parallel
Strand 3
A
145 151anti-parallel
Strand 4
A
173 177anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
B
135 136parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
192 197parallel
Strand 3
B
101 112anti-parallel
Strand 4
B
234 240anti-parallel
Strand 5
B
69 71anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
234 240anti-parallel
Strand 3
B
101 112anti-parallel
Strand 4
B
242 248anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
78 81anti-parallel
Strand 3
B
214 225anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
182 186anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
69 72anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
113 119anti-parallel
Strand 4
C
162 166anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
191 201anti-parallel
Strand 3
C
126 134anti-parallel
Strand 4
C
151 155anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 171first strand
Strand 2
C
108 111anti-parallel
Strand 3
C
223 225anti-parallel
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