Analysis of interatomic Contacts of Structural Units in PDB entry:
9VFT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VFT entry

There are 6 chains in PDB entry 9VFT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	GLU 1	SER 124
E	ASP 1	LYS 107
D	THR 24	GLN 69
B	CYS 7	GLN 256
C	GLY 1	GLN 240
A	GLU 9	SER 300

There are 24 helices in PDB entry 9VFT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	87	91	Right-handed 310
Helix 2	AA2	D	35	39	Right-handed 310
Helix 3	AA3	D	50	55	Right-handed alpha
Helix 4	AA4	B	35	37	Right-handed 310
Helix 5	AA5	B	43	47	Right-handed 310
Helix 6	AA6	B	56	61	Right-handed alpha
Helix 7	AA7	B	82	86	Right-handed alpha
Helix 8	AA8	B	91	98	Right-handed alpha
Helix 9	AA9	B	149	154	Right-handed alpha
Helix 10	AB1	B	164	168	Right-handed 310
Helix 11	AB2	B	173	180	Right-handed 310
Helix 12	AB3	C	43	48	Right-handed alpha
Helix 13	AB4	C	62	67	Right-handed 310
Helix 14	AB5	C	92	96	Right-handed 310
Helix 15	AB6	C	97	103	Right-handed alpha
Helix 16	AB7	C	143	148	Right-handed alpha
Helix 17	AB8	C	181	188	Right-handed 310
Helix 18	AB9	A	11	17	Right-handed alpha
Helix 19	AC1	A	45	49	Right-handed 310
Helix 20	AC2	A	55	59	Right-handed 310
Helix 21	AC3	A	71	74	Right-handed 310
Helix 22	AC4	A	75	81	Right-handed alpha
Helix 23	AC5	A	111	119	Right-handed alpha
Helix 24	AC6	A	163	168	Right-handed 310

There are 20 sheets in PDB entry 9VFT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	21	25	anti-parallel
Strand 3	F	78	82	anti-parallel
Strand 4	F	69	73	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	120	122	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	59	first strand
Strand 2	F	44	51	anti-parallel
Strand 3	F	34	40	anti-parallel
Strand 4	F	95	98	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	13	first strand
Strand 2	E	103	106	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	44	46	first strand
Strand 2	E	33	38	anti-parallel
Strand 3	E	87	90	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	49	first strand
Strand 2	E	53	54	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	18	first strand
Strand 2	B	21	25	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	192	197	parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	234	240	anti-parallel
Strand 5	B	64	71	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	192	197	parallel
Strand 3	B	99	111	anti-parallel
Strand 4	B	242	250	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	78	81	anti-parallel
Strand 3	B	214	225	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	182	186	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	136	first strand
Strand 2	A	274	275	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	209	218	anti-parallel
Strand 3	C	69	72	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	52	first strand
Strand 2	C	209	218	anti-parallel
Strand 3	C	113	120	anti-parallel
Strand 4	C	162	165	anti-parallel
Strand 5	A	43	44	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	85	first strand
Strand 2	C	191	201	anti-parallel
Strand 3	C	126	134	anti-parallel
Strand 4	C	151	156	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	177	first strand
Strand 2	C	106	110	anti-parallel
Strand 3	C	223	227	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	91	first strand
Strand 2	A	242	258	anti-parallel
Strand 3	A	121	135	anti-parallel
Strand 4	A	184	187	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	91	first strand
Strand 2	A	242	258	anti-parallel
Strand 3	A	121	135	anti-parallel
Strand 4	A	196	197	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	97	98	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	105	first strand
Strand 2	A	227	232	anti-parallel
Strand 3	A	145	151	anti-parallel
Strand 4	A	173	177	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VFT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VFT