Analysis of interatomic Contacts of Structural Units in PDB entry:
9VFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VFV entry

There are 4 chains in PDB entry 9VFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 19MET 661
A
 PHE 663VAL 813
B
 GLU 15MET 661
B
 PHE 663VAL 813
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 77 helices in PDB entry 9VFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 27Right-handed alpha
Helix 2
AA2
A
37 67Right-handed alpha
Helix 3
AA3
A
84 92Right-handed alpha
Helix 4
AA4
A
94 105Right-handed alpha
Helix 5
AA5
A
109 113Right-handed 310
Helix 6
AA6
A
124 141Right-handed alpha
Helix 7
AA7
A
241 246Right-handed 310
Helix 8
AA8
A
251 256Right-handed alpha
Helix 9
AA9
A
263 267Right-handed 310
Helix 10
AB1
A
278 298Right-handed alpha
Helix 11
AB2
A
298 303Right-handed alpha
Helix 12
AB3
A
307 309Right-handed 310
Helix 13
AB4
A
310 314Right-handed alpha
Helix 14
AB5
A
323 326Right-handed 310
Helix 15
AB6
A
327 339Right-handed alpha
Helix 16
AB7
A
342 354Right-handed alpha
Helix 17
AB8
A
362 366Right-handed 310
Helix 18
AB9
A
371 378Right-handed alpha
Helix 19
AC1
A
378 400Right-handed alpha
Helix 20
AC2
A
404 410Right-handed alpha
Helix 21
AC3
A
423 431Right-handed alpha
Helix 22
AC4
A
440 445Right-handed alpha
Helix 23
AC5
A
450 457Right-handed alpha
Helix 24
AC6
A
478 489Right-handed alpha
Helix 25
AC7
A
496 505Right-handed 310
Helix 26
AC8
A
508 535Right-handed alpha
Helix 27
AC9
A
553 557Right-handed 310
Helix 28
AD1
A
558 575Right-handed alpha
Helix 29
AD2
A
595 614Right-handed alpha
Helix 30
AD3
A
634 639Right-handed alpha
Helix 31
AD4
A
658 666Right-handed alpha
Helix 32
AD5
A
677 686Right-handed alpha
Helix 33
AD6
A
696 707Right-handed alpha
Helix 34
AD7
A
709 717Right-handed alpha
Helix 35
AD8
A
717 730Right-handed alpha
Helix 36
AD9
A
740 750Right-handed alpha
Helix 37
AE1
A
759 776Right-handed alpha
Helix 38
AE2
A
776 790Right-handed alpha
Helix 39
AE3
A
795 807Right-handed alpha
Helix 40
AE4
B
16 27Right-handed alpha
Helix 41
AE5
B
39 67Right-handed alpha
Helix 42
AE6
B
85 92Right-handed alpha
Helix 43
AE7
B
94 106Right-handed alpha
Helix 44
AE8
B
108 116Right-handed alpha
Helix 45
AE9
B
124 140Right-handed alpha
Helix 46
AF1
B
241 246Right-handed 310
Helix 47
AF2
B
252 257Right-handed alpha
Helix 48
AF3
B
261 267Right-handed 310
Helix 49
AF4
B
278 306Right-handed alpha
Helix 50
AF5
B
323 325Right-handed 310
Helix 51
AF6
B
326 337Right-handed alpha
Helix 52
AF7
B
342 353Right-handed alpha
Helix 53
AF8
B
362 366Right-handed 310
Helix 54
AF9
B
371 378Right-handed alpha
Helix 55
AG1
B
378 398Right-handed alpha
Helix 56
AG2
B
405 410Right-handed alpha
Helix 57
AG3
B
423 430Right-handed alpha
Helix 58
AG4
B
438 447Right-handed alpha
Helix 59
AG5
B
450 457Right-handed alpha
Helix 60
AG6
B
469 474Right-handed alpha
Helix 61
AG7
B
478 487Right-handed alpha
Helix 62
AG8
B
498 503Right-handed 310
Helix 63
AG9
B
510 535Right-handed alpha
Helix 64
AH1
B
553 556Right-handed 310
Helix 65
AH2
B
557 575Right-handed alpha
Helix 66
AH3
B
595 614Right-handed alpha
Helix 67
AH4
B
631 639Right-handed alpha
Helix 68
AH5
B
640 642Right-handed 310
Helix 69
AH6
B
657 665Right-handed alpha
Helix 70
AH7
B
676 686Right-handed alpha
Helix 71
AH8
B
696 706Right-handed alpha
Helix 72
AH9
B
709 715Right-handed alpha
Helix 73
AI1
B
717 728Right-handed alpha
Helix 74
AI2
B
740 749Right-handed alpha
Helix 75
AI3
B
759 775Right-handed alpha
Helix 76
AI4
B
776 790Right-handed alpha
Helix 77
AI5
B
795 807Right-handed alpha
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There are 11 sheets in PDB entry 9VFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 192first strand
Strand 2
A
209 220anti-parallel
Strand 3
A
229 237anti-parallel
Strand 4
A
144 147parallel
Strand 5
A
71 75parallel
Strand 6
A
315 319parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 161first strand
Strand 2
A
164 168anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 199first strand
Strand 2
A
202 206anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 357first strand
Strand 2
A
434 435parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
420 422anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 626first strand
Strand 2
A
583 588parallel
Strand 3
A
544 549parallel
Strand 4
A
644 646parallel
Strand 5
A
669 672parallel
Strand 6
A
691 692parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 192first strand
Strand 2
B
209 220anti-parallel
Strand 3
B
229 237anti-parallel
Strand 4
B
144 149parallel
Strand 5
B
71 75parallel
Strand 6
B
315 319parallel
Strand 7
B
354 357parallel
Strand 8
B
434 435parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 160first strand
Strand 2
B
165 168anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 198first strand
Strand 2
B
203 206anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 370first strand
Strand 2
B
420 422anti-parallel
Strand 3
B
413 414anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
544 548first strand
Strand 2
B
583 587parallel
Strand 3
B
622 626parallel
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