Analysis of interatomic Contacts of Structural Units in PDB entry:
9VFW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VFW entry

There are 7 chains in PDB entry 9VFW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	ALA 1	ASN 293
A	ALA 1	ASN 293
B	ALA 1	ASN 293
C	ALA 1	ASN 293
D	ALA 1	ASN 293
E	ALA 1	ASN 293
G	ALA 1	ASN 293

There are 8 helices in PDB entry 9VFW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	2	6	Right-handed 310
Helix 2	AA2	F	217	223	Right-handed alpha
Helix 3	AA3	A	2	6	Right-handed 310
Helix 4	AA4	B	2	6	Right-handed 310
Helix 5	AA5	C	2	6	Right-handed 310
Helix 6	AA6	D	2	6	Right-handed 310
Helix 7	AA7	E	2	6	Right-handed 310
Helix 8	AA8	G	2	6	Right-handed 310

There are 43 sheets in PDB entry 9VFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	23	first strand
Strand 2	F	40	43	anti-parallel
Strand 3	F	50	56	anti-parallel
Strand 4	F	229	235	anti-parallel
Strand 5	F	97	102	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	26	29	first strand
Strand 2	F	34	37	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	70	first strand
Strand 2	F	75	81	anti-parallel
Strand 3	F	244	260	anti-parallel
Strand 4	F	265	285	anti-parallel
Strand 5	F	290	292	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	165	170	anti-parallel
Strand 3	F	87	88	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	F	165	170	anti-parallel
Strand 3	F	156	158	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	112	first strand
Strand 2	A	148	149	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	148	149	first strand
Strand 2	G	111	112	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	175	first strand
Strand 2	F	181	182	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	23	first strand
Strand 2	A	40	43	anti-parallel
Strand 3	A	50	57	anti-parallel
Strand 4	A	228	235	anti-parallel
Strand 5	A	97	102	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	29	first strand
Strand 2	A	34	37	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	75	89	anti-parallel
Strand 3	A	244	260	anti-parallel
Strand 4	A	265	275	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	156	158	first strand
Strand 2	A	165	170	anti-parallel
Strand 3	A	75	89	anti-parallel
Strand 4	A	244	260	anti-parallel
Strand 5	A	278	285	anti-parallel
Strand 6	A	290	292	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	B	148	149	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	175	first strand
Strand 2	A	181	182	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	B	40	43	anti-parallel
Strand 3	B	50	57	anti-parallel
Strand 4	B	228	235	anti-parallel
Strand 5	B	97	102	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	34	35	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	165	170	anti-parallel
Strand 3	B	75	88	anti-parallel
Strand 4	B	244	260	anti-parallel
Strand 5	B	265	275	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	165	170	anti-parallel
Strand 3	B	75	88	anti-parallel
Strand 4	B	244	260	anti-parallel
Strand 5	B	278	285	anti-parallel
Strand 6	B	290	292	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	C	148	149	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	175	first strand
Strand 2	B	181	182	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	23	first strand
Strand 2	C	40	43	anti-parallel
Strand 3	C	50	56	anti-parallel
Strand 4	C	229	235	anti-parallel
Strand 5	C	97	102	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	29	first strand
Strand 2	C	34	37	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	75	88	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	156	158	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	75	88	anti-parallel
Strand 3	C	244	260	anti-parallel
Strand 4	C	265	285	anti-parallel
Strand 5	C	290	292	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	112	first strand
Strand 2	D	148	149	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	175	first strand
Strand 2	C	181	182	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	23	first strand
Strand 2	D	40	43	anti-parallel
Strand 3	D	50	57	anti-parallel
Strand 4	D	228	235	anti-parallel
Strand 5	D	97	102	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	26	29	first strand
Strand 2	D	34	37	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	75	88	anti-parallel
Strand 3	D	165	170	anti-parallel
Strand 4	D	156	158	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	75	88	anti-parallel
Strand 3	D	244	260	anti-parallel
Strand 4	D	265	285	anti-parallel
Strand 5	D	290	292	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	111	112	first strand
Strand 2	E	148	149	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	175	first strand
Strand 2	D	181	182	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	23	first strand
Strand 2	E	40	43	anti-parallel
Strand 3	E	50	56	anti-parallel
Strand 4	E	229	235	anti-parallel
Strand 5	E	97	100	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	29	first strand
Strand 2	E	34	37	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	70	first strand
Strand 2	E	75	88	anti-parallel
Strand 3	E	165	170	anti-parallel
Strand 4	E	156	158	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	70	first strand
Strand 2	E	75	88	anti-parallel
Strand 3	E	244	260	anti-parallel
Strand 4	E	265	285	anti-parallel
Strand 5	E	290	292	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	112	first strand
Strand 2	G	148	149	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	175	first strand
Strand 2	E	181	182	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	23	first strand
Strand 2	G	40	43	anti-parallel
Strand 3	G	50	57	anti-parallel
Strand 4	G	228	235	anti-parallel
Strand 5	G	97	102	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	29	first strand
Strand 2	G	34	37	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	71	first strand
Strand 2	G	75	88	anti-parallel
Strand 3	G	244	260	anti-parallel
Strand 4	G	265	275	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	156	158	first strand
Strand 2	G	165	170	anti-parallel
Strand 3	G	75	88	anti-parallel
Strand 4	G	244	260	anti-parallel
Strand 5	G	278	285	anti-parallel
Strand 6	G	290	292	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	175	first strand
Strand 2	G	181	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VFW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VFW