Analysis of interatomic Contacts of Structural Units in PDB entry:
9VFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VFZ entry

There is 1 chain in PDB entry 9VFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2GLY 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9VFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
18 29Right-handed alpha
Helix 3
AA3
A
35 39Right-handed 310
Helix 4
AA4
A
50 54Right-handed 310
Helix 5
AA5
A
57 76Right-handed alpha
Helix 6
AA6
A
90 105Right-handed alpha
Helix 7
AA7
A
114 116Right-handed 310
Helix 8
AA8
A
119 131Right-handed alpha
Helix 9
AA9
A
167 184Right-handed alpha
Helix 10
AB1
A
193 198Right-handed alpha
Helix 11
AB2
A
207 220Right-handed alpha
Helix 12
AB3
A
221 229Right-handed alpha
Helix 13
AB4
A
243 252Right-handed alpha
Helix 14
AB5
A
288 293Right-handed alpha
Helix 15
AB6
A
322 338Right-handed alpha
Helix 16
AB7
A
354 365Right-handed alpha
Helix 17
AB8
A
374 377Right-handed 310
Helix 18
AB9
A
378 384Right-handed alpha
Helix 19
AC1
A
412 428Right-handed alpha
Helix 20
AC2
A
430 443Right-handed alpha
Helix 21
AC3
A
455 464Right-handed alpha
Helix 22
AC4
A
466 470Right-handed 310
Helix 23
AC5
A
526 543Right-handed alpha
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There are 4 sheets in PDB entry 9VFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
154 159anti-parallel
Strand 3
A
140 144anti-parallel
Strand 4
A
81 85parallel
Strand 5
A
109 112parallel
Strand 6
A
203 206parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 258first strand
Strand 2
A
232 235parallel
Strand 3
A
300 304parallel
Strand 4
A
311 315anti-parallel
Strand 5
A
319 320anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 371first strand
Strand 2
A
346 350parallel
Strand 3
A
387 392parallel
Strand 4
A
396 399anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 453first strand
Strand 2
A
516 523anti-parallel
Strand 3
A
504 510anti-parallel
Strand 4
A
493 501anti-parallel
Strand 5
A
478 486anti-parallel
Strand 6
A
474 475anti-parallel
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