Analysis of interatomic Contacts of Structural Units in PDB entry:
9VG1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VG1 entry

There are 5 chains in PDB entry 9VG1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ASP 1ILE 106
E
 GLU 1VAL 120
A
 VAL 71THR 291
C
 GLY 1GLU 232
B
 ASN 30ARG 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9VG1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 80Right-handed alpha
Helix 2
AA2
A
111 119Right-handed alpha
Helix 3
AA3
A
163 168Right-handed 310
Helix 4
AA4
A
220 224Right-handed 310
Helix 5
AA5
C
43 48Right-handed alpha
Helix 6
AA6
C
62 68Right-handed 310
Helix 7
AA7
C
92 96Right-handed 310
Helix 8
AA8
C
97 103Right-handed alpha
Helix 9
AA9
C
143 148Right-handed alpha
Helix 10
AB1
B
35 37Right-handed 310
Helix 11
AB2
B
89 98Right-handed alpha
Helix 12
AB3
B
149 154Right-handed alpha
Helix 13
AB4
B
164 168Right-handed 310
Helix 14
AB5
B
173 180Right-handed 310
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There are 19 sheets in PDB entry 9VG1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 12first strand
Strand 2
D
103 105parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
20 24first strand
Strand 2
D
70 74anti-parallel
Strand 3
D
64 65anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 54first strand
Strand 2
D
44 49anti-parallel
Strand 3
D
33 38anti-parallel
Strand 4
D
85 90anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 4first strand
Strand 2
E
24 25anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
45 50first strand
Strand 2
E
34 39anti-parallel
Strand 3
E
93 98anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
70 72first strand
Strand 2
E
79 81anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 91first strand
Strand 2
A
242 258anti-parallel
Strand 3
A
121 135anti-parallel
Strand 4
A
184 187anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 91first strand
Strand 2
A
242 258anti-parallel
Strand 3
A
121 135anti-parallel
Strand 4
A
196 197anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 105first strand
Strand 2
A
227 232anti-parallel
Strand 3
A
145 151anti-parallel
Strand 4
A
173 177anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
B
135 136parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
69 72anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
209 218anti-parallel
Strand 3
C
113 119anti-parallel
Strand 4
C
162 166anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
80 85first strand
Strand 2
C
191 195anti-parallel
Strand 3
C
129 134anti-parallel
Strand 4
C
151 155anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 172first strand
Strand 2
C
108 111anti-parallel
Strand 3
C
223 225anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
126 127first strand
Strand 2
C
200 201anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
192 196parallel
Strand 3
B
109 112anti-parallel
Strand 4
B
234 240anti-parallel
Strand 5
B
64 65anti-parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
192 196parallel
Strand 3
B
109 112anti-parallel
Strand 4
B
234 240anti-parallel
Strand 5
B
69 71anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
214 225anti-parallel
Strand 3
B
119 128anti-parallel
Strand 4
B
182 186anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
101 105first strand
Strand 2
B
243 248anti-parallel
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