Analysis of interatomic Contacts of Structural Units in PDB entry:
9VG7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VG7 entry

There are 3 chains in PDB entry 9VG7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 41	ASP 1127
B	CYS 41	ASP 1127
C	CYS 41	ASP 1127

There are 84 helices in PDB entry 9VG7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	337	343	Right-handed alpha
Helix 3	AA3	A	349	353	Right-handed 310
Helix 4	AA4	A	365	371	Right-handed 310
Helix 5	AA5	A	383	389	Right-handed 310
Helix 6	AA6	A	405	410	Right-handed 310
Helix 7	AA7	A	416	422	Right-handed alpha
Helix 8	AA8	A	438	443	Right-handed alpha
Helix 9	AA9	A	493	496	Right-handed 310
Helix 10	AB1	A	610	615	Right-handed alpha
Helix 11	AB2	A	616	620	Right-handed 310
Helix 12	AB3	A	621	626	Right-handed alpha
Helix 13	AB4	A	725	732	Right-handed alpha
Helix 14	AB5	A	734	742	Right-handed alpha
Helix 15	AB6	A	743	745	Right-handed 310
Helix 16	AB7	A	746	771	Right-handed alpha
Helix 17	AB8	A	804	814	Right-handed alpha
Helix 18	AB9	A	824	829	Right-handed 310
Helix 19	AC1	A	836	844	Right-handed alpha
Helix 20	AC2	A	854	872	Right-handed alpha
Helix 21	AC3	A	874	878	Right-handed 310
Helix 22	AC4	A	885	897	Right-handed alpha
Helix 23	AC5	A	900	907	Right-handed alpha
Helix 24	AC6	A	907	928	Right-handed alpha
Helix 25	AC7	A	933	953	Right-handed alpha
Helix 26	AC8	A	954	956	Right-handed 310
Helix 27	AC9	A	964	972	Right-handed alpha
Helix 28	AD1	A	973	1021	Right-handed alpha
Helix 29	AD2	B	294	304	Right-handed alpha
Helix 30	AD3	B	337	343	Right-handed alpha
Helix 31	AD4	B	349	353	Right-handed 310
Helix 32	AD5	B	365	371	Right-handed 310
Helix 33	AD6	B	383	389	Right-handed 310
Helix 34	AD7	B	405	410	Right-handed 310
Helix 35	AD8	B	416	422	Right-handed alpha
Helix 36	AD9	B	438	443	Right-handed alpha
Helix 37	AE1	B	493	496	Right-handed 310
Helix 38	AE2	B	610	615	Right-handed alpha
Helix 39	AE3	B	616	620	Right-handed 310
Helix 40	AE4	B	621	626	Right-handed alpha
Helix 41	AE5	B	725	732	Right-handed alpha
Helix 42	AE6	B	734	742	Right-handed alpha
Helix 43	AE7	B	743	745	Right-handed 310
Helix 44	AE8	B	746	771	Right-handed alpha
Helix 45	AE9	B	804	814	Right-handed alpha
Helix 46	AF1	B	824	829	Right-handed 310
Helix 47	AF2	B	836	844	Right-handed alpha
Helix 48	AF3	B	854	872	Right-handed alpha
Helix 49	AF4	B	874	878	Right-handed 310
Helix 50	AF5	B	885	897	Right-handed alpha
Helix 51	AF6	B	900	907	Right-handed alpha
Helix 52	AF7	B	907	928	Right-handed alpha
Helix 53	AF8	B	933	953	Right-handed alpha
Helix 54	AF9	B	954	956	Right-handed 310
Helix 55	AG1	B	964	972	Right-handed alpha
Helix 56	AG2	B	973	1021	Right-handed alpha
Helix 57	AG3	C	294	304	Right-handed alpha
Helix 58	AG4	C	337	343	Right-handed alpha
Helix 59	AG5	C	349	353	Right-handed 310
Helix 60	AG6	C	365	371	Right-handed 310
Helix 61	AG7	C	383	389	Right-handed 310
Helix 62	AG8	C	405	410	Right-handed 310
Helix 63	AG9	C	416	422	Right-handed alpha
Helix 64	AH1	C	438	443	Right-handed alpha
Helix 65	AH2	C	493	496	Right-handed 310
Helix 66	AH3	C	610	615	Right-handed alpha
Helix 67	AH4	C	616	620	Right-handed 310
Helix 68	AH5	C	621	626	Right-handed alpha
Helix 69	AH6	C	725	732	Right-handed alpha
Helix 70	AH7	C	734	742	Right-handed alpha
Helix 71	AH8	C	743	745	Right-handed 310
Helix 72	AH9	C	746	771	Right-handed alpha
Helix 73	AI1	C	804	814	Right-handed alpha
Helix 74	AI2	C	824	829	Right-handed 310
Helix 75	AI3	C	836	844	Right-handed alpha
Helix 76	AI4	C	854	872	Right-handed alpha
Helix 77	AI5	C	874	878	Right-handed 310
Helix 78	AI6	C	885	897	Right-handed alpha
Helix 79	AI7	C	900	907	Right-handed alpha
Helix 80	AI8	C	907	928	Right-handed alpha
Helix 81	AI9	C	933	953	Right-handed alpha
Helix 82	AJ1	C	954	956	Right-handed 310
Helix 83	AJ2	C	964	972	Right-handed alpha
Helix 84	AJ3	C	973	1021	Right-handed alpha

There are 51 sheets in PDB entry 9VG7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	54	first strand
Strand 2	A	85	91	anti-parallel
Strand 3	A	263	269	anti-parallel
Strand 4	A	107	113	anti-parallel
Strand 5	A	192	203	anti-parallel
Strand 6	A	206	218	anti-parallel
Strand 7	A	234	240	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	79	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	247	254	anti-parallel
Strand 3	A	118	124	anti-parallel
Strand 4	A	133	138	anti-parallel
Strand 5	A	142	159	anti-parallel
Strand 6	A	162	180	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	247	254	anti-parallel
Strand 3	A	142	159	parallel
Strand 4	A	162	180	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	315	first strand
Strand 2	A	586	590	anti-parallel
Strand 3	A	600	604	anti-parallel
Strand 4	A	639	642	anti-parallel
Strand 5	A	633	636	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	328	first strand
Strand 2	A	529	534	parallel
Strand 3	A	537	545	anti-parallel
Strand 4	A	575	579	anti-parallel
Strand 5	A	564	568	anti-parallel
Strand 6	A	556	558	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	403	anti-parallel
Strand 3	A	498	507	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	376	380	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	361	362	first strand
Strand 2	A	515	516	parallel
Strand 3	A	391	392	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	483	485	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	475	first strand
Strand 2	A	478	481	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	646	first strand
Strand 2	A	681	684	parallel
Strand 3	A	661	664	anti-parallel
Strand 4	A	655	658	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	689	691	first strand
Strand 2	B	775	777	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	716	first strand
Strand 2	A	1047	1066	anti-parallel
Strand 3	A	1035	1044	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	699	716	first strand
Strand 2	A	1047	1066	anti-parallel
Strand 3	A	1082	1085	anti-parallel
Strand 4	A	1090	1093	anti-parallel
Strand 5	A	1101	1102	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	721	724	first strand
Strand 2	A	846	849	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	775	777	first strand
Strand 2	C	689	691	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	785	first strand
Strand 2	A	788	789	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1108	1113	first strand
Strand 2	A	1074	1078	anti-parallel
Strand 3	A	1069	1071	anti-parallel
Strand 4	A	1121	1122	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	54	first strand
Strand 2	B	85	91	anti-parallel
Strand 3	B	263	269	anti-parallel
Strand 4	B	107	113	anti-parallel
Strand 5	B	192	203	anti-parallel
Strand 6	B	206	218	anti-parallel
Strand 7	B	234	240	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	79	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	247	254	anti-parallel
Strand 3	B	118	124	anti-parallel
Strand 4	B	133	138	anti-parallel
Strand 5	B	142	159	anti-parallel
Strand 6	B	162	180	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	101	102	first strand
Strand 2	B	247	254	anti-parallel
Strand 3	B	142	159	parallel
Strand 4	B	162	180	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	315	first strand
Strand 2	B	586	590	anti-parallel
Strand 3	B	600	604	anti-parallel
Strand 4	B	639	642	anti-parallel
Strand 5	B	633	636	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	529	534	parallel
Strand 3	B	537	545	anti-parallel
Strand 4	B	575	579	anti-parallel
Strand 5	B	564	568	anti-parallel
Strand 6	B	556	558	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	498	507	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	380	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	362	first strand
Strand 2	B	515	516	parallel
Strand 3	B	391	392	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	483	485	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	475	first strand
Strand 2	B	478	481	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	646	first strand
Strand 2	B	681	684	parallel
Strand 3	B	661	664	anti-parallel
Strand 4	B	655	658	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	689	691	first strand
Strand 2	C	775	777	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	699	716	first strand
Strand 2	B	1047	1066	anti-parallel
Strand 3	B	1035	1044	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	699	716	first strand
Strand 2	B	1047	1066	anti-parallel
Strand 3	B	1082	1085	anti-parallel
Strand 4	B	1090	1093	anti-parallel
Strand 5	B	1101	1102	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	724	first strand
Strand 2	B	846	849	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	784	785	first strand
Strand 2	B	788	789	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1108	1113	first strand
Strand 2	B	1074	1078	anti-parallel
Strand 3	B	1069	1071	anti-parallel
Strand 4	B	1121	1122	parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	54	first strand
Strand 2	C	85	91	anti-parallel
Strand 3	C	263	269	anti-parallel
Strand 4	C	107	113	anti-parallel
Strand 5	C	192	203	anti-parallel
Strand 6	C	206	218	anti-parallel
Strand 7	C	234	240	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	79	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	247	254	anti-parallel
Strand 3	C	118	124	anti-parallel
Strand 4	C	133	138	anti-parallel
Strand 5	C	142	159	anti-parallel
Strand 6	C	162	180	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	247	254	anti-parallel
Strand 3	C	142	159	parallel
Strand 4	C	162	180	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	315	first strand
Strand 2	C	586	590	anti-parallel
Strand 3	C	600	604	anti-parallel
Strand 4	C	639	642	anti-parallel
Strand 5	C	633	636	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	328	first strand
Strand 2	C	529	534	parallel
Strand 3	C	537	545	anti-parallel
Strand 4	C	575	579	anti-parallel
Strand 5	C	564	568	anti-parallel
Strand 6	C	556	558	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	358	first strand
Strand 2	C	394	403	anti-parallel
Strand 3	C	498	507	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	380	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	361	362	first strand
Strand 2	C	515	516	parallel
Strand 3	C	391	392	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	483	485	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	472	475	first strand
Strand 2	C	478	481	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	646	first strand
Strand 2	C	681	684	parallel
Strand 3	C	661	664	anti-parallel
Strand 4	C	655	658	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	716	first strand
Strand 2	C	1047	1066	anti-parallel
Strand 3	C	1035	1044	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	716	first strand
Strand 2	C	1047	1066	anti-parallel
Strand 3	C	1082	1085	anti-parallel
Strand 4	C	1090	1093	anti-parallel
Strand 5	C	1101	1102	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	721	724	first strand
Strand 2	C	846	849	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	784	785	first strand
Strand 2	C	788	789	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1108	1113	first strand
Strand 2	C	1074	1078	anti-parallel
Strand 3	C	1069	1071	anti-parallel
Strand 4	C	1121	1122	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VG7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VG7