Analysis of interatomic Contacts of Structural Units in PDB entry:
9VGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VGI entry

There are 2 chains in PDB entry 9VGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ASP 347
B
 GLY 1ASP 347
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9VGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 15Right-handed alpha
Helix 2
AA2
A
21 25Right-handed 310
Helix 3
AA3
A
26 32Right-handed 310
Helix 4
AA4
A
47 52Right-handed alpha
Helix 5
AA5
A
55 70Right-handed alpha
Helix 6
AA6
A
81 98Right-handed alpha
Helix 7
AA7
A
99 104Right-handed alpha
Helix 8
AA8
A
105 107Right-handed 310
Helix 9
AA9
A
140 144Right-handed 310
Helix 10
AB1
A
145 149Right-handed 310
Helix 11
AB2
A
155 183Right-handed alpha
Helix 12
AB3
A
185 195Right-handed alpha
Helix 13
AB4
A
211 215Right-handed 310
Helix 14
AB5
A
262 269Right-handed alpha
Helix 15
AB6
A
323 327Right-handed alpha
Helix 16
AB7
A
339 345Right-handed alpha
Helix 17
AB8
B
8 14Right-handed alpha
Helix 18
AB9
B
21 25Right-handed 310
Helix 19
AC1
B
26 31Right-handed 310
Helix 20
AC2
B
47 52Right-handed alpha
Helix 21
AC3
B
55 70Right-handed alpha
Helix 22
AC4
B
81 97Right-handed alpha
Helix 23
AC5
B
99 104Right-handed alpha
Helix 24
AC6
B
105 107Right-handed 310
Helix 25
AC7
B
145 149Right-handed 310
Helix 26
AC8
B
155 183Right-handed alpha
Helix 27
AC9
B
185 195Right-handed alpha
Helix 28
AD1
B
211 214Right-handed 310
Helix 29
AD2
B
262 269Right-handed alpha
Helix 30
AD3
B
307 312Right-handed 310
Helix 31
AD4
B
323 327Right-handed alpha
Helix 32
AD5
B
340 345Right-handed 310
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There are 6 sheets in PDB entry 9VGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
72 76parallel
Strand 3
A
257 261anti-parallel
Strand 4
A
227 232anti-parallel
Strand 5
A
288 296anti-parallel
Strand 6
A
197 205anti-parallel
Strand 7
A
132 139anti-parallel
Strand 8
A
115 117anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 221first strand
Strand 2
A
278 280anti-parallel
Strand 3
A
239 243anti-parallel
Strand 4
A
246 250anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
321 322anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
72 76parallel
Strand 3
B
257 261anti-parallel
Strand 4
B
227 232anti-parallel
Strand 5
B
288 296anti-parallel
Strand 6
B
197 205anti-parallel
Strand 7
B
132 139anti-parallel
Strand 8
B
115 117anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 221first strand
Strand 2
B
278 281anti-parallel
Strand 3
B
239 243anti-parallel
Strand 4
B
246 250anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
301 302first strand
Strand 2
B
321 322anti-parallel
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