Analysis of interatomic Contacts of Structural Units in PDB entry:
9VGL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VGL entry

There are 8 chains in PDB entry 9VGL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	HIS 89
A	ILE 91	LYS 393
D	THR 3	HIS 89
D	ILE 91	LYS 392
C	TYR 4	HIS 89
C	ILE 91	TYR 391
B	THR 3	HIS 89
B	ILE 91	TYR 391

There are 87 helices in PDB entry 9VGL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	23	Right-handed 310
Helix 2	AA2	A	24	40	Right-handed alpha
Helix 3	AA3	A	41	55	Right-handed alpha
Helix 4	AA4	A	65	73	Right-handed alpha
Helix 5	AA5	A	81	84	Right-handed 310
Helix 6	AA6	A	89	104	Right-handed alpha
Helix 7	AA7	A	116	130	Right-handed alpha
Helix 8	AA8	A	139	144	Right-handed alpha
Helix 9	AA9	A	145	155	Right-handed alpha
Helix 10	AB1	A	168	182	Right-handed alpha
Helix 11	AB2	A	199	209	Right-handed alpha
Helix 12	AB3	A	209	224	Right-handed alpha
Helix 13	AB4	A	238	246	Right-handed alpha
Helix 14	AB5	A	247	249	Right-handed 310
Helix 15	AB6	A	273	278	Right-handed alpha
Helix 16	AB7	A	305	309	Right-handed 310
Helix 17	AB8	A	314	323	Right-handed alpha
Helix 18	AB9	A	333	348	Right-handed alpha
Helix 19	AC1	A	352	361	Right-handed alpha
Helix 20	AC2	A	362	365	Right-handed 310
Helix 21	AC3	A	381	383	Right-handed 310
Helix 22	AC4	A	384	392	Right-handed alpha
Helix 23	AC5	D	21	23	Right-handed 310
Helix 24	AC6	D	24	40	Right-handed alpha
Helix 25	AC7	D	41	55	Right-handed alpha
Helix 26	AC8	D	65	73	Right-handed alpha
Helix 27	AC9	D	81	84	Right-handed 310
Helix 28	AD1	D	89	104	Right-handed alpha
Helix 29	AD2	D	116	130	Right-handed alpha
Helix 30	AD3	D	139	145	Right-handed alpha
Helix 31	AD4	D	145	155	Right-handed alpha
Helix 32	AD5	D	168	183	Right-handed alpha
Helix 33	AD6	D	199	209	Right-handed alpha
Helix 34	AD7	D	209	224	Right-handed alpha
Helix 35	AD8	D	238	246	Right-handed alpha
Helix 36	AD9	D	247	249	Right-handed 310
Helix 37	AE1	D	273	278	Right-handed alpha
Helix 38	AE2	D	305	309	Right-handed 310
Helix 39	AE3	D	314	323	Right-handed alpha
Helix 40	AE4	D	333	348	Right-handed alpha
Helix 41	AE5	D	352	361	Right-handed alpha
Helix 42	AE6	D	362	365	Right-handed 310
Helix 43	AE7	D	381	383	Right-handed 310
Helix 44	AE8	D	384	392	Right-handed alpha
Helix 45	AE9	C	21	23	Right-handed 310
Helix 46	AF1	C	24	40	Right-handed alpha
Helix 47	AF2	C	41	55	Right-handed alpha
Helix 48	AF3	C	65	73	Right-handed alpha
Helix 49	AF4	C	81	84	Right-handed 310
Helix 50	AF5	C	89	104	Right-handed alpha
Helix 51	AF6	C	116	130	Right-handed alpha
Helix 52	AF7	C	139	145	Right-handed alpha
Helix 53	AF8	C	145	155	Right-handed alpha
Helix 54	AF9	C	168	182	Right-handed alpha
Helix 55	AG1	C	199	209	Right-handed alpha
Helix 56	AG2	C	209	224	Right-handed alpha
Helix 57	AG3	C	238	246	Right-handed alpha
Helix 58	AG4	C	247	249	Right-handed 310
Helix 59	AG5	C	273	278	Right-handed alpha
Helix 60	AG6	C	305	309	Right-handed 310
Helix 61	AG7	C	314	323	Right-handed alpha
Helix 62	AG8	C	333	348	Right-handed alpha
Helix 63	AG9	C	352	361	Right-handed alpha
Helix 64	AH1	C	362	364	Right-handed 310
Helix 65	AH2	C	381	383	Right-handed 310
Helix 66	AH3	C	384	391	Right-handed alpha
Helix 67	AH4	B	21	40	Right-handed alpha
Helix 68	AH5	B	41	55	Right-handed alpha
Helix 69	AH6	B	65	73	Right-handed alpha
Helix 70	AH7	B	81	84	Right-handed 310
Helix 71	AH8	B	89	104	Right-handed alpha
Helix 72	AH9	B	116	130	Right-handed alpha
Helix 73	AI1	B	139	145	Right-handed alpha
Helix 74	AI2	B	145	155	Right-handed alpha
Helix 75	AI3	B	168	182	Right-handed alpha
Helix 76	AI4	B	199	209	Right-handed alpha
Helix 77	AI5	B	209	224	Right-handed alpha
Helix 78	AI6	B	238	246	Right-handed alpha
Helix 79	AI7	B	247	249	Right-handed 310
Helix 80	AI8	B	273	278	Right-handed alpha
Helix 81	AI9	B	305	309	Right-handed 310
Helix 82	AJ1	B	314	323	Right-handed alpha
Helix 83	AJ2	B	333	348	Right-handed alpha
Helix 84	AJ3	B	352	361	Right-handed alpha
Helix 85	AJ4	B	362	364	Right-handed 310
Helix 86	AJ5	B	381	383	Right-handed 310
Helix 87	AJ6	B	384	391	Right-handed alpha

There are 16 sheets in PDB entry 9VGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	15	16	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	64	first strand
Strand 2	A	75	79	anti-parallel
Strand 3	A	372	376	parallel
Strand 4	A	230	234	parallel
Strand 5	A	255	263	parallel
Strand 6	A	326	332	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	162	first strand
Strand 2	A	132	138	parallel
Strand 3	A	108	113	parallel
Strand 4	A	187	189	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	283	first strand
Strand 2	A	286	290	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	15	16	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	64	first strand
Strand 2	D	75	79	anti-parallel
Strand 3	D	372	376	parallel
Strand 4	D	230	234	parallel
Strand 5	D	255	263	parallel
Strand 6	D	326	332	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	162	first strand
Strand 2	D	132	138	parallel
Strand 3	D	108	113	parallel
Strand 4	D	187	189	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	283	first strand
Strand 2	D	286	290	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	15	16	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	75	79	anti-parallel
Strand 3	C	372	376	parallel
Strand 4	C	230	234	parallel
Strand 5	C	255	263	parallel
Strand 6	C	326	332	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	132	138	parallel
Strand 3	C	108	113	parallel
Strand 4	C	187	189	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	283	first strand
Strand 2	C	286	290	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	B	15	16	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	75	79	anti-parallel
Strand 3	B	372	376	parallel
Strand 4	B	230	234	parallel
Strand 5	B	255	263	parallel
Strand 6	B	326	332	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	162	first strand
Strand 2	B	132	138	parallel
Strand 3	B	108	113	parallel
Strand 4	B	187	189	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	283	first strand
Strand 2	B	286	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VGL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VGL