Analysis of interatomic Contacts of Structural Units in PDB entry:
9VGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VGP entry

There are 2 chains in PDB entry 9VGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 21GLY 405
B
 MET 21GLY 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9VGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 34Right-handed alpha
Helix 2
AA2
A
49 58Right-handed alpha
Helix 3
AA3
A
74 81Right-handed 310
Helix 4
AA4
A
85 89Right-handed 310
Helix 5
AA5
A
93 103Right-handed alpha
Helix 6
AA6
A
106 112Right-handed alpha
Helix 7
AA7
A
113 127Right-handed alpha
Helix 8
AA8
A
136 140Right-handed alpha
Helix 9
AA9
A
142 154Right-handed alpha
Helix 10
AB1
A
160 172Right-handed alpha
Helix 11
AB2
A
173 178Right-handed 310
Helix 12
AB3
A
184 189Right-handed alpha
Helix 13
AB4
A
189 210Right-handed alpha
Helix 14
AB5
A
214 222Right-handed alpha
Helix 15
AB6
A
230 263Right-handed alpha
Helix 16
AB7
A
263 273Right-handed alpha
Helix 17
AB8
A
276 288Right-handed alpha
Helix 18
AB9
A
318 323Right-handed alpha
Helix 19
AC1
A
356 375Right-handed alpha
Helix 20
AC2
A
382 385Right-handed 310
Helix 21
AC3
B
22 34Right-handed alpha
Helix 22
AC4
B
49 59Right-handed alpha
Helix 23
AC5
B
74 81Right-handed 310
Helix 24
AC6
B
85 89Right-handed 310
Helix 25
AC7
B
93 103Right-handed alpha
Helix 26
AC8
B
106 113Right-handed alpha
Helix 27
AC9
B
113 128Right-handed alpha
Helix 28
AD1
B
136 140Right-handed alpha
Helix 29
AD2
B
142 154Right-handed alpha
Helix 30
AD3
B
160 172Right-handed alpha
Helix 31
AD4
B
173 178Right-handed 310
Helix 32
AD5
B
184 189Right-handed alpha
Helix 33
AD6
B
189 210Right-handed alpha
Helix 34
AD7
B
214 222Right-handed alpha
Helix 35
AD8
B
230 263Right-handed alpha
Helix 36
AD9
B
263 273Right-handed alpha
Helix 37
AE1
B
276 288Right-handed alpha
Helix 38
AE2
B
318 323Right-handed alpha
Helix 39
AE3
B
356 375Right-handed alpha
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There are 8 sheets in PDB entry 9VGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
44 47anti-parallel
Strand 3
A
314 317parallel
Strand 4
A
294 298anti-parallel
Strand 5
A
63 64anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
399 403anti-parallel
Strand 3
A
377 380anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
227 228anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
395 397anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
44 47anti-parallel
Strand 3
B
314 317parallel
Strand 4
B
294 298anti-parallel
Strand 5
B
63 64anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
399 403anti-parallel
Strand 3
B
377 380anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 224first strand
Strand 2
B
227 228anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 387first strand
Strand 2
B
395 397anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il