Analysis of interatomic Contacts of Structural Units in PDB entry:
9VH1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VH1 entry

There are 3 chains in PDB entry 9VH1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLU 85ARG 545
E
 LYS 83ARG 545
F
 MET 1GLU 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 9VH1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
362 378Right-handed alpha
Helix 2
AA2
D
405 409Right-handed 310
Helix 3
AA3
D
412 417Right-handed alpha
Helix 4
AA4
D
428 433Right-handed alpha
Helix 5
AA5
D
436 440Right-handed 310
Helix 6
AA6
D
467 473Right-handed alpha
Helix 7
AA7
D
488 498Right-handed alpha
Helix 8
AA8
D
505 518Right-handed alpha
Helix 9
AA9
D
522 527Right-handed alpha
Helix 10
AB1
D
527 545Right-handed alpha
Helix 11
AB2
E
362 377Right-handed alpha
Helix 12
AB3
E
402 406Right-handed 310
Helix 13
AB4
E
409 417Right-handed alpha
Helix 14
AB5
E
436 438Right-handed 310
Helix 15
AB6
E
470 475Right-handed alpha
Helix 16
AB7
E
483 499Right-handed alpha
Helix 17
AB8
E
504 518Right-handed alpha
Helix 18
AB9
E
522 544Right-handed alpha
Helix 19
AC1
F
10 15Right-handed 310
Helix 20
AC2
F
22 26Right-handed 310
Helix 21
AC3
F
27 30Right-handed 310
Helix 22
AC4
F
31 40Right-handed alpha
Helix 23
AC5
F
70 72Right-handed 310
Helix 24
AC6
F
91 96Right-handed alpha
Helix 25
AC7
F
102 106Right-handed 310
Helix 26
AC8
F
134 147Right-handed alpha
Helix 27
AC9
F
152 165Right-handed alpha
Helix 28
AD1
F
166 176Right-handed alpha
Helix 29
AD2
F
181 194Right-handed alpha
Helix 30
AD3
F
195 199Right-handed 310
Helix 31
AD4
F
201 210Right-handed alpha
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There are 4 sheets in PDB entry 9VH1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 92first strand
Strand 2
D
422 426parallel
Strand 3
D
392 395parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 91first strand
Strand 2
E
440 441parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
54 57first strand
Strand 2
F
74 77anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
119 120first strand
Strand 2
F
126 127anti-parallel
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