Analysis of interatomic Contacts of Structural Units in PDB entry:
9VH2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9VH2 entry

There are 3 chains in PDB entry 9VH2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASN 26THR 200
A
 ASP 26ASN 599
C
 VAL 50ASN 70
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9VH2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
26 38Right-handed alpha
Helix 2
AA2
B
55 59Right-handed 310
Helix 3
AA3
B
85 91Right-handed 310
Helix 4
AA4
B
109 115Right-handed 310
Helix 5
AA5
B
133 139Right-handed 310
Helix 6
AA6
B
157 163Right-handed 310
Helix 7
AA7
B
183 188Right-handed 310
Helix 8
AA8
B
190 195Right-handed 310
Helix 9
AA9
A
27 37Right-handed alpha
Helix 10
AB1
A
51 55Right-handed 310
Helix 11
AB2
A
60 64Right-handed 310
Helix 12
AB3
A
130 134Right-handed 310
Helix 13
AB4
A
153 159Right-handed 310
Helix 14
AB5
A
177 183Right-handed 310
Helix 15
AB6
A
203 209Right-handed 310
Helix 16
AB7
A
227 232Right-handed alpha
Helix 17
AB8
A
299 305Right-handed 310
Helix 18
AB9
A
323 329Right-handed 310
Helix 19
AC1
A
395 401Right-handed 310
Helix 20
AC2
A
419 423Right-handed 310
Helix 21
AC3
A
465 471Right-handed 310
Helix 22
AC4
A
489 495Right-handed 310
Helix 23
AC5
A
537 543Right-handed 310
Helix 24
AC6
A
561 567Right-handed 310
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There are 10 sheets in PDB entry 9VH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 40first strand
Strand 2
B
81 83anti-parallel
Strand 3
B
103 105parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 64first strand
Strand 2
B
70 74anti-parallel
Strand 3
B
96 98parallel
Strand 4
B
120 122parallel
Strand 5
B
144 146parallel
Strand 6
B
168 170parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
129 131first strand
Strand 2
B
151 153parallel
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There are 23 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
67 69anti-parallel
Strand 3
A
91 93parallel
Strand 4
A
115 117parallel
Strand 5
A
140 142parallel
Strand 6
A
164 166parallel
Strand 7
A
188 190parallel
Strand 8
A
214 216parallel
Strand 9
A
239 241parallel
Strand 10
A
263 265parallel
Strand 11
A
286 288parallel
Strand 12
A
310 312parallel
Strand 13
A
334 336parallel
Strand 14
A
358 360parallel
Strand 15
A
382 384parallel
Strand 16
A
406 408parallel
Strand 17
A
430 432parallel
Strand 18
A
452 454parallel
Strand 19
A
476 478parallel
Strand 20
A
500 502parallel
Strand 21
A
524 526parallel
Strand 22
A
548 550parallel
Strand 23
A
571 573parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
98 101parallel
Strand 3
A
122 126parallel
Strand 4
A
147 149parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
A
222 223parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 273first strand
Strand 2
A
293 296parallel
Strand 3
A
317 318parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
413 414parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 440first strand
Strand 2
A
457 463parallel
Strand 3
A
481 487parallel
Strand 4
A
507 509parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
533 534first strand
Strand 2
A
555 558parallel
Strand 3
A
578 579parallel
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