Analysis of interatomic Contacts of Structural Units in PDB entry:
9VH4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VH4 entry

There are 9 chains in PDB entry 9VH4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 18	SER 339
B	ALA 350	GLU 514
C	GLN 1	SER 119
F	GLN 1	SER 119
I	GLN 1	SER 119
D	ASP 18	SER 339
G	ASP 18	SER 339
E	ALA 350	GLU 514
H	ALA 350	GLU 514

There are 30 helices in PDB entry 9VH4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	73	80	Right-handed alpha
Helix 2	AA2	A	114	123	Right-handed alpha
Helix 3	AA3	A	200	208	Right-handed alpha
Helix 4	AA4	B	380	402	Right-handed alpha
Helix 5	AA5	B	417	470	Right-handed alpha
Helix 6	AA6	B	488	497	Right-handed alpha
Helix 7	AA7	B	505	514	Right-handed alpha
Helix 8	AA8	C	28	32	Right-handed 310
Helix 9	AA9	C	74	76	Right-handed 310
Helix 10	AB1	C	87	91	Right-handed 310
Helix 11	AB2	F	28	32	Right-handed 310
Helix 12	AB3	F	74	76	Right-handed 310
Helix 13	AB4	F	87	91	Right-handed 310
Helix 14	AB5	I	28	32	Right-handed 310
Helix 15	AB6	I	74	76	Right-handed 310
Helix 16	AB7	I	87	91	Right-handed 310
Helix 17	AB8	D	73	80	Right-handed alpha
Helix 18	AB9	D	114	123	Right-handed alpha
Helix 19	AC1	D	200	208	Right-handed alpha
Helix 20	AC2	G	73	80	Right-handed alpha
Helix 21	AC3	G	114	123	Right-handed alpha
Helix 22	AC4	G	200	208	Right-handed alpha
Helix 23	AC5	E	380	402	Right-handed alpha
Helix 24	AC6	E	417	470	Right-handed alpha
Helix 25	AC7	E	488	497	Right-handed alpha
Helix 26	AC8	E	505	514	Right-handed alpha
Helix 27	AC9	H	380	402	Right-handed alpha
Helix 28	AD1	H	417	470	Right-handed alpha
Helix 29	AD2	H	488	497	Right-handed alpha
Helix 30	AD3	H	505	514	Right-handed alpha

There are 42 sheets in PDB entry 9VH4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	B	365	371	anti-parallel
Strand 3	B	374	379	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	B	365	371	anti-parallel
Strand 3	A	19	21	anti-parallel
Strand 4	B	480	483	anti-parallel
Strand 5	B	473	475	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	41	43	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	48	first strand
Strand 2	A	329	331	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	308	309	parallel
Strand 3	A	321	322	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	96	98	parallel
Strand 3	A	281	283	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	125	127	first strand
Strand 2	A	269	275	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	264	267	anti-parallel
Strand 5	A	164	166	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	132	first strand
Strand 2	A	269	275	anti-parallel
Strand 3	A	188	197	anti-parallel
Strand 4	A	242	250	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	154	first strand
Strand 2	A	157	159	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	177	182	first strand
Strand 2	A	255	260	anti-parallel
Strand 3	A	215	218	anti-parallel
Strand 4	A	223	226	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	295	296	anti-parallel
Strand 3	A	316	317	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	18	24	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	93	98	anti-parallel
Strand 5	C	108	109	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	60	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	34	39	anti-parallel
Strand 4	C	93	98	anti-parallel
Strand 5	C	113	114	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	18	24	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	46	51	anti-parallel
Strand 3	F	34	39	anti-parallel
Strand 4	F	93	98	anti-parallel
Strand 5	F	108	109	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	60	first strand
Strand 2	F	46	51	anti-parallel
Strand 3	F	34	39	anti-parallel
Strand 4	F	93	98	anti-parallel
Strand 5	F	113	114	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	18	24	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	93	98	anti-parallel
Strand 5	I	108	109	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	46	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	93	98	anti-parallel
Strand 5	I	113	114	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	24	first strand
Strand 2	E	365	371	anti-parallel
Strand 3	E	374	379	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	24	first strand
Strand 2	E	365	371	anti-parallel
Strand 3	D	19	21	anti-parallel
Strand 4	E	480	483	anti-parallel
Strand 5	E	473	475	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	41	43	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	46	48	first strand
Strand 2	D	329	331	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	308	309	parallel
Strand 3	D	321	322	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	96	98	parallel
Strand 3	D	281	283	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	127	first strand
Strand 2	D	269	275	anti-parallel
Strand 3	D	188	197	anti-parallel
Strand 4	D	264	267	anti-parallel
Strand 5	D	164	166	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	132	first strand
Strand 2	D	269	275	anti-parallel
Strand 3	D	188	197	anti-parallel
Strand 4	D	242	250	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	154	first strand
Strand 2	D	157	159	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	182	first strand
Strand 2	D	255	260	anti-parallel
Strand 3	D	215	218	anti-parallel
Strand 4	D	223	226	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	302	first strand
Strand 2	D	295	296	anti-parallel
Strand 3	D	316	317	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	24	first strand
Strand 2	H	365	371	anti-parallel
Strand 3	H	374	379	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	23	24	first strand
Strand 2	H	365	371	anti-parallel
Strand 3	G	19	21	anti-parallel
Strand 4	H	480	483	anti-parallel
Strand 5	H	473	475	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	31	33	first strand
Strand 2	G	41	43	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	48	first strand
Strand 2	G	329	331	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	50	51	first strand
Strand 2	G	308	309	parallel
Strand 3	G	321	322	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	68	first strand
Strand 2	G	96	98	parallel
Strand 3	G	281	283	parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	127	first strand
Strand 2	G	269	275	anti-parallel
Strand 3	G	188	197	anti-parallel
Strand 4	G	264	267	anti-parallel
Strand 5	G	164	166	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	132	first strand
Strand 2	G	269	275	anti-parallel
Strand 3	G	188	197	anti-parallel
Strand 4	G	242	250	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	154	first strand
Strand 2	G	157	159	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	177	182	first strand
Strand 2	G	255	260	anti-parallel
Strand 3	G	215	218	anti-parallel
Strand 4	G	223	226	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	302	first strand
Strand 2	G	295	296	anti-parallel
Strand 3	G	316	317	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VH4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VH4