Analysis of interatomic Contacts of Structural Units in PDB entry:
9VH5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9VH5 entry

There are 9 chains in PDB entry 9VH5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 24	THR 344
B	ARG 345	PHE 516
C	GLU 1	VAL 116
D	ASN 24	THR 344
E	ARG 345	PHE 516
F	GLU 1	VAL 116
G	ASN 24	THR 344
H	ARG 345	PHE 516
I	GLU 1	VAL 116

There are 27 helices in PDB entry 9VH5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	88	Right-handed alpha
Helix 2	AA2	A	89	96	Right-handed 310
Helix 3	AA3	A	120	132	Right-handed alpha
Helix 4	AA4	A	203	212	Right-handed alpha
Helix 5	AA5	B	383	399	Right-handed alpha
Helix 6	AA6	B	420	472	Right-handed alpha
Helix 7	AA7	B	490	499	Right-handed alpha
Helix 8	AA8	B	507	516	Right-handed alpha
Helix 9	AA9	C	86	90	Right-handed 310
Helix 10	AB1	D	81	88	Right-handed alpha
Helix 11	AB2	D	89	96	Right-handed 310
Helix 12	AB3	D	120	132	Right-handed alpha
Helix 13	AB4	D	203	212	Right-handed alpha
Helix 14	AB5	E	382	399	Right-handed alpha
Helix 15	AB6	E	420	472	Right-handed alpha
Helix 16	AB7	E	490	499	Right-handed alpha
Helix 17	AB8	E	507	516	Right-handed alpha
Helix 18	AB9	F	86	90	Right-handed 310
Helix 19	AC1	G	81	88	Right-handed alpha
Helix 20	AC2	G	89	96	Right-handed 310
Helix 21	AC3	G	120	132	Right-handed alpha
Helix 22	AC4	G	203	212	Right-handed alpha
Helix 23	AC5	H	382	399	Right-handed alpha
Helix 24	AC6	H	420	472	Right-handed alpha
Helix 25	AC7	H	490	499	Right-handed alpha
Helix 26	AC8	H	507	516	Right-handed alpha
Helix 27	AC9	I	86	90	Right-handed 310

There are 45 sheets in PDB entry 9VH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	382	first strand
Strand 2	B	367	373	anti-parallel
Strand 3	A	27	33	anti-parallel
Strand 4	B	482	485	anti-parallel
Strand 5	B	475	477	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	50	52	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	57	first strand
Strand 2	A	331	333	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	310	311	parallel
Strand 3	A	323	324	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	290	294	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	77	first strand
Strand 2	A	102	105	parallel
Strand 3	A	282	285	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	245	253	parallel
Strand 3	A	192	200	anti-parallel
Strand 4	A	272	275	anti-parallel
Strand 5	A	136	138	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	245	253	parallel
Strand 3	A	192	200	anti-parallel
Strand 4	A	267	270	anti-parallel
Strand 5	A	167	169	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	171	172	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	157	first strand
Strand 2	A	160	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	185	first strand
Strand 2	A	258	263	anti-parallel
Strand 3	A	218	221	anti-parallel
Strand 4	A	226	229	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	297	299	anti-parallel
Strand 3	A	318	321	anti-parallel
Strand 4	B	405	407	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	17	26	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	67	72	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	31	39	anti-parallel
Strand 4	C	92	99	anti-parallel
Strand 5	C	107	108	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	59	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	31	39	anti-parallel
Strand 4	C	92	99	anti-parallel
Strand 5	C	112	113	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	376	381	first strand
Strand 2	E	367	373	anti-parallel
Strand 3	D	27	33	anti-parallel
Strand 4	E	482	485	anti-parallel
Strand 5	E	475	477	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	42	first strand
Strand 2	D	50	52	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	57	first strand
Strand 2	D	331	333	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	60	first strand
Strand 2	D	310	311	parallel
Strand 3	D	323	324	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	70	first strand
Strand 2	D	290	294	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	77	first strand
Strand 2	D	102	105	parallel
Strand 3	D	282	285	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	245	253	parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	272	275	anti-parallel
Strand 5	D	136	138	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	116	117	first strand
Strand 2	D	245	253	parallel
Strand 3	D	192	200	anti-parallel
Strand 4	D	267	270	anti-parallel
Strand 5	D	167	169	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	147	first strand
Strand 2	D	171	172	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	157	first strand
Strand 2	D	160	162	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	185	first strand
Strand 2	D	258	263	anti-parallel
Strand 3	D	218	221	anti-parallel
Strand 4	D	226	229	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	302	304	first strand
Strand 2	D	297	299	anti-parallel
Strand 3	D	318	321	anti-parallel
Strand 4	E	405	407	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	7	first strand
Strand 2	F	17	26	anti-parallel
Strand 3	F	77	83	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	46	52	anti-parallel
Strand 3	F	31	39	anti-parallel
Strand 4	F	92	99	anti-parallel
Strand 5	F	107	108	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	46	52	anti-parallel
Strand 3	F	31	39	anti-parallel
Strand 4	F	92	99	anti-parallel
Strand 5	F	112	113	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	376	381	first strand
Strand 2	H	367	373	anti-parallel
Strand 3	G	27	33	anti-parallel
Strand 4	H	482	485	anti-parallel
Strand 5	H	475	477	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	42	first strand
Strand 2	G	50	52	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	55	57	first strand
Strand 2	G	331	333	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	310	311	parallel
Strand 3	G	323	324	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	67	70	first strand
Strand 2	G	290	294	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	74	77	first strand
Strand 2	G	102	105	parallel
Strand 3	G	282	285	parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	117	first strand
Strand 2	G	245	253	parallel
Strand 3	G	192	200	anti-parallel
Strand 4	G	272	275	anti-parallel
Strand 5	G	136	138	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	117	first strand
Strand 2	G	245	253	parallel
Strand 3	G	192	200	anti-parallel
Strand 4	G	267	270	anti-parallel
Strand 5	G	167	169	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	146	147	first strand
Strand 2	G	171	172	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	152	157	first strand
Strand 2	G	160	162	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	180	185	first strand
Strand 2	G	258	263	anti-parallel
Strand 3	G	218	221	anti-parallel
Strand 4	G	226	229	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	302	304	first strand
Strand 2	G	297	299	anti-parallel
Strand 3	G	318	321	anti-parallel
Strand 4	H	405	407	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	7	first strand
Strand 2	I	17	26	anti-parallel
Strand 3	I	77	83	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	31	39	anti-parallel
Strand 4	I	92	99	anti-parallel
Strand 5	I	107	108	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	57	59	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	31	39	anti-parallel
Strand 4	I	92	99	anti-parallel
Strand 5	I	112	113	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9VH5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9VH5